Difference between revisions of "Ec-25 000020"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14386 RXN-14386] == * direction: ** LEFT-TO-RIGHT * common name: ** Aminotransferase class V do...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-330...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14386 RXN-14386] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** Aminotransferase class V domain
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** jasmonic acid biosynthesis
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** Cysteine desulfurase
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−
* ec number:
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** [http://enzyme.expasy.org/EC/2.8.1.7 EC-2.8.1.7]
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* Synonym(s):
 
* Synonym(s):
 +
** jasmonate biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''10''' reactions found over '''19''' reactions in the full pathway
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** 1 [[S-CD-S-SP-Complex]][c] '''=>''' 1 [[CD-2S-SP-Complex]][c]
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* [[RXN-10696]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 an S-sulfanyl-[cysteine desulfurase]-S-sulfanyl-[disordered-form scaffold protein] complex[c] '''=>''' 1 a [cysteine desulfurase]-(S-sulfanyl)2-[disordered-form scaffold protein] complex[c]
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*** [[Ec-22_002920]]
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*** [[Ec-26_004320]]
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== Genes associated with this reaction  ==
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*** [[Ec-08_006390]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 reconstruction source(s) associated:
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* [[Ec-21_005640]]
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*** [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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* [[RXN-10697]]
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***EC-NUMBER
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** 4 associated gene(s):
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* [[Ec-21_003740]]
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*** [[Ec-06_001380]]
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** ESILICULOSUS_GENOME
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*** [[Ec-16_003560]]
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***EC-NUMBER
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*** [[Ec-16_001250]]
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* [[Ec-22_000950]]
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*** [[Ec-14_006530]]
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** ESILICULOSUS_GENOME
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** 1 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-esiliculosus_genome]]
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== Pathways  ==
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* [[RXN-10698]]
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* [[PWY-7250]], [2Fe-2S] iron-sulfur cluster biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7250 PWY-7250]
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** 2 associated gene(s):
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** '''10''' reactions found over '''10''' reactions in the full pathway
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*** [[Ec-19_005290]]
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== Reconstruction information  ==
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*** [[Ec-14_006530]]
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* Category: [[annotation]]
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** 1 reconstruction source(s) associated:
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** Source: [[annotation-esiliculosus_genome]]
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*** [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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* [[RXN-10702]]
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** 2 associated gene(s):
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*** [[Ec-19_005290]]
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*** [[Ec-14_006530]]
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** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
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* [[RXN-10703]]
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** 2 associated gene(s):
 +
*** [[Ec-14_006530]]
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*** [[Ec-19_005290]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-10704]]
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** 4 associated gene(s):
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*** [[Ec-14_006530]]
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*** [[Ec-16_001250]]
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*** [[Ec-16_003560]]
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*** [[Ec-06_001380]]
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** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
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* [[RXN-10705]]
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** 4 associated gene(s):
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*** [[Ec-16_003560]]
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*** [[Ec-16_001250]]
 +
*** [[Ec-06_001380]]
 +
*** [[Ec-14_006530]]
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** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
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* [[RXN-10706]]
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** 3 associated gene(s):
 +
*** [[Ec-08_006390]]
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*** [[Ec-26_004320]]
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*** [[Ec-22_002920]]
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** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
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* [[RXN-10707]]
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** 3 associated gene(s):
 +
*** [[Ec-26_004320]]
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*** [[Ec-22_002920]]
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*** [[Ec-08_006390]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-1321]]
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** 4 associated gene(s):
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*** [[Ec-03_000010]]
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*** [[Ec-03_000020]]
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*** [[Ec-20_003620]]
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*** [[Ec-20_003630]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=12-OXOPHYTODIENOATE-REDUCTASE-RXN 12-OXOPHYTODIENOATE-REDUCTASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=ALLENE-OXIDE-CYCLASE-RXN ALLENE-OXIDE-CYCLASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10695 RXN-10695]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10699 RXN-10699]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10700 RXN-10700]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10701 RXN-10701]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10708 RXN-10708]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-745 RXN-745]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-19 RXN1F-19]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* ARACYC:
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{{#set: common name=Aminotransferase class V domain}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-735 PWY-735]
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{{#set: common name=Cysteine desulfurase}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: ec number=EC-2.8.1.7}}
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{{#set: common name=jasmonic acid biosynthesis}}
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{{#set: gene associated=Ec-21_005640|Ec-21_003740|Ec-22_000950}}
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{{#set: common name=jasmonate biosynthesis}}
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{{#set: in pathway=PWY-7250}}
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{{#set: reaction found=10}}
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{{#set: reconstruction category=annotation}}
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{{#set: total reaction=19}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: completion rate=53.0}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 13:30, 21 March 2018

Pathway PWY-735

  • taxonomic range:
  • common name:
    • jasmonic acid biosynthesis
  • Synonym(s):
    • jasmonate biosynthesis

Reaction(s) found

10 reactions found over 19 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-25_000020&oldid=19231"