Difference between revisions of "COA-PWY"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7183 PWY-7183] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATEKIN-RXN ASPARTATEKIN-RXN] == * direction: ** REVERSIBLE * common name: ** aspartate/glutam...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7183 PWY-7183] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATEKIN-RXN ASPARTATEKIN-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
−
** pyrimidine nucleobases salvage I
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** aspartate/glutamate/uridylate kinase
 +
** aspartate kinase/homoserine dehydrogenase
 +
** Aspartate/glutamate/uridylate kinase
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** aspartate kinase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.7.2.4 EC-2.7.2.4]
 
* Synonym(s):
 
* Synonym(s):
−
** uracil salvage
 
  
−
== Reaction(s) found ==
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== Reaction Formula ==
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  '''1''' reactions found over '''1''' reactions in the full pathway
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* With identifiers:
−
* [[URACIL-PRIBOSYLTRANS-RXN]]
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** 1 [[L-ASPARTATE]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[L-BETA-ASPARTYL-P]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Ec-03_003570]]
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** 1 L-aspartate[c] '''+''' 1 ATP[c] '''<=>''' 1 ADP[c] '''+''' 1 L-aspartyl-4-phosphate[c]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** [[orthology-aragem]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) not found ==
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* Gene: [[Ec-24_000610]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-11_000830]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-27_003730]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-13_002530]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
 +
== Pathways ==
 +
* [[HOMOSERSYN-PWY]], L-homoserine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERSYN-PWY HOMOSERSYN-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7153]], grixazone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7153 PWY-7153]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
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** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6559]], spermidine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6559 PWY-6559]
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** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6562]], norspermidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6562 PWY-6562]
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** '''2''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[P101-PWY]], ectoine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=P101-PWY P101-PWY]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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* RHEA:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-7183 PWY-7183]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23776 23776]
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{{#set: taxonomic range=TAX-4751}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00480 R00480]
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{{#set: taxonomic range=TAX-2157}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/P08495 P08495]
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{{#set: common name=pyrimidine nucleobases salvage I}}
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** [http://www.uniprot.org/uniprot/P44505 P44505]
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{{#set: common name=uracil salvage}}
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** [http://www.uniprot.org/uniprot/P27725 P27725]
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/Q04795 Q04795]
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{{#set: total reaction=1}}
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** [http://www.uniprot.org/uniprot/Q57991 Q57991]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/P00561 P00561]
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** [http://www.uniprot.org/uniprot/P00562 P00562]
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** [http://www.uniprot.org/uniprot/Q9PHT4 Q9PHT4]
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** [http://www.uniprot.org/uniprot/Q9JTN3 Q9JTN3]
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** [http://www.uniprot.org/uniprot/P53553 P53553]
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** [http://www.uniprot.org/uniprot/P10869 P10869]
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** [http://www.uniprot.org/uniprot/P08660 P08660]
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** [http://www.uniprot.org/uniprot/P26512 P26512]
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** [http://www.uniprot.org/uniprot/P37142 P37142]
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** [http://www.uniprot.org/uniprot/P41403 P41403]
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** [http://www.uniprot.org/uniprot/P0A4Z9 P0A4Z9]
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** [http://www.uniprot.org/uniprot/Q9SA18 Q9SA18]
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** [http://www.uniprot.org/uniprot/P49079 P49079]
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** [http://www.uniprot.org/uniprot/P49080 P49080]
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** [http://www.uniprot.org/uniprot/P93402 P93402]
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** [http://www.uniprot.org/uniprot/O81852 O81852]
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** [http://www.uniprot.org/uniprot/O63067 O63067]
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** [http://www.uniprot.org/uniprot/O65027 O65027]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=aspartate/glutamate/uridylate kinase}}
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{{#set: common name=aspartate kinase/homoserine dehydrogenase}}
 +
{{#set: common name=Aspartate/glutamate/uridylate kinase}}
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{{#set: common name=aspartate kinase}}
 +
{{#set: ec number=EC-2.7.2.4}}
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{{#set: gene associated=Ec-24_000610|Ec-11_000830|Ec-27_003730|Ec-13_002530}}
 +
{{#set: in pathway=HOMOSERSYN-PWY|PWY-7153|DAPLYSINESYN-PWY|PWY-2942|PWY-2941|PWY-6559|PWY-6562|PWY-5097|P101-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 13:31, 21 March 2018

Reaction ASPARTATEKIN-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • aspartate/glutamate/uridylate kinase
    • aspartate kinase/homoserine dehydrogenase
    • Aspartate/glutamate/uridylate kinase
    • aspartate kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-aspartate[c] + 1 ATP[c] <=> 1 ADP[c] + 1 L-aspartyl-4-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • HOMOSERSYN-PWY, L-homoserine biosynthesis: HOMOSERSYN-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7153, grixazone biosynthesis: PWY-7153
    • 2 reactions found over 8 reactions in the full pathway
  • DAPLYSINESYN-PWY, L-lysine biosynthesis I: DAPLYSINESYN-PWY
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-2942, L-lysine biosynthesis III: PWY-2942
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-2941, L-lysine biosynthesis II: PWY-2941
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-6559, spermidine biosynthesis II: PWY-6559
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6562, norspermidine biosynthesis: PWY-6562
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5097, L-lysine biosynthesis VI: PWY-5097
    • 7 reactions found over 7 reactions in the full pathway
  • P101-PWY, ectoine biosynthesis: P101-PWY
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=COA-PWY&oldid=19294"