Difference between revisions of "Ec-21 003740"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-330...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-93 RXN1F-93] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-93 RXN1F-93] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** LEFT-TO-RIGHT
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* common name:
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* ec number:
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** jasmonic acid biosynthesis
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** [http://enzyme.expasy.org/EC/1.14.11.23 EC-1.14.11.23]
 
* Synonym(s):
 
* Synonym(s):
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** jasmonate biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''10''' reactions found over '''19''' reactions in the full pathway
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* With identifiers:
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* [[RXN-10696]]
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[DIHYDROKAEMPFEROL-CMPD]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[CPD1F-90]][c] '''+''' 1 [[WATER]][c]
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** 3 associated gene(s):
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* With common name(s):
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*** [[Ec-22_002920]]
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** 1 oxygen[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 (+)-dihydrokaempferol[c] '''=>''' 1 H+[c] '''+''' 1 CO2[c] '''+''' 1 succinate[c] '''+''' 1 kaempferol[c] '''+''' 1 H2O[c]
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*** [[Ec-08_006390]]
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*** [[Ec-26_004320]]
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== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-esiliculosus_genome]]
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* Gene: [[Ec-19_002760]]
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* [[RXN-10697]]
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** Source: [[orthology-aragem]]
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** 4 associated gene(s):
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* Gene: [[Ec-08_003510]]
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*** [[Ec-14_006530]]
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** Source: [[orthology-aragem]]
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*** [[Ec-16_003560]]
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* Gene: [[Ec-19_002750]]
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*** [[Ec-06_001380]]
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** Source: [[orthology-aragem]]
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*** [[Ec-16_001250]]
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== Pathways  ==
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** 1 reconstruction source(s) associated:
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* [[PWY-3101]], flavonol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3101 PWY-3101]
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*** [[annotation-esiliculosus_genome]]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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* [[RXN-10698]]
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* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
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** 2 associated gene(s):
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** '''6''' reactions found over '''10''' reactions in the full pathway
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*** [[Ec-14_006530]]
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== Reconstruction information  ==
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*** [[Ec-19_005290]]
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* Category: [[orthology]]
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** 1 reconstruction source(s) associated:
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** Source: [[orthology-aragem]]
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*** [[annotation-esiliculosus_genome]]
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*** Tool: [[pantograph]]
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* [[RXN-10702]]
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** 2 associated gene(s):
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*** [[Ec-19_005290]]
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*** [[Ec-14_006530]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-10703]]
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** 2 associated gene(s):
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*** [[Ec-14_006530]]
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*** [[Ec-19_005290]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-10704]]
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** 4 associated gene(s):
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*** [[Ec-06_001380]]
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*** [[Ec-16_001250]]
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*** [[Ec-14_006530]]
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*** [[Ec-16_003560]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-10705]]
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** 4 associated gene(s):
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*** [[Ec-14_006530]]
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*** [[Ec-16_001250]]
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*** [[Ec-16_003560]]
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*** [[Ec-06_001380]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-10706]]
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−
** 3 associated gene(s):
+
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*** [[Ec-26_004320]]
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*** [[Ec-08_006390]]
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*** [[Ec-22_002920]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-10707]]
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** 3 associated gene(s):
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*** [[Ec-08_006390]]
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*** [[Ec-26_004320]]
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*** [[Ec-22_002920]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-1321]]
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** 4 associated gene(s):
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*** [[Ec-20_003620]]
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*** [[Ec-03_000020]]
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*** [[Ec-03_000010]]
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*** [[Ec-20_003630]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=12-OXOPHYTODIENOATE-REDUCTASE-RXN 12-OXOPHYTODIENOATE-REDUCTASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=ALLENE-OXIDE-CYCLASE-RXN ALLENE-OXIDE-CYCLASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10695 RXN-10695]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10699 RXN-10699]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10700 RXN-10700]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10701 RXN-10701]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10708 RXN-10708]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-745 RXN-745]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-19 RXN1F-19]
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== External links  ==
 
== External links  ==
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* ARACYC:
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* LIGAND-RXN:
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-735 PWY-735]
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** [http://www.genome.jp/dbget-bin/www_bget?R03126 R03126]
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{{#set: taxonomic range=TAX-33090}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=jasmonic acid biosynthesis}}
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{{#set: ec number=EC-1.14.11.23}}
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{{#set: common name=jasmonate biosynthesis}}
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{{#set: gene associated=Ec-19_002760|Ec-08_003510|Ec-19_002750}}
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{{#set: reaction found=10}}
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{{#set: in pathway=PWY-3101|PWY-6787}}
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{{#set: total reaction=19}}
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{{#set: reconstruction category=orthology}}
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{{#set: completion rate=53.0}}
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{{#set: reconstruction source=orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 13:31, 21 March 2018

Reaction RXN1F-93

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-3101, flavonol biosynthesis: PWY-3101
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6787, flavonoid biosynthesis (in equisetum): PWY-6787
    • 6 reactions found over 10 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-21_003740&oldid=19398"