Difference between revisions of "GLYOXIII-RXN"

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(Created page with "Category:Gene == Gene Ec-11_002540 == * left end position: ** 2661380 * transcription direction: ** NEGATIVE * right end position: ** 2684911 * centisome position: ** 42.3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6480 RXN0-6480] == * direction: ** LEFT-TO-RIGHT * common name: ** ribonuclease P ** Ribonucle...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-11_002540 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6480 RXN0-6480] ==
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* left end position:
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* direction:
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** 2661380
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** ribonuclease P
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* right end position:
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** Ribonuclease P, Rpp40
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** 2684911
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** RNAse P, Rpr2/Rpp21 subunit
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* centisome position:
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* ec number:
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** 42.313587   
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** [http://enzyme.expasy.org/EC/3.1.26.5 EC-3.1.26.5]
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0048_0016
 
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** Esi0048_0016
 
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** TPS
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[RXN1G-1435]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[CPD0-2354]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[tRNAs]][c] '''+''' 1 [[tRNA-fragment]][c]
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***automated-name-match
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* With common name(s):
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* [[RXN1G-1436]]
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** 1 a tRNA precursor with a 5' extension[c] '''+''' 1 H2O[c] '''=>''' 1 an uncharged tRNA[c] '''+''' 1 a tRNA fragment[c]
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** esiliculosus_genome
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***automated-name-match
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== Genes associated with this reaction  ==
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* [[RXN1G-1437]]
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Genes have been associated with this reaction based on different elements listed below.
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** esiliculosus_genome
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* Gene: [[Ec-03_005340]]
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***automated-name-match
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** Source: [[annotation-esiliculosus_genome]]
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* [[RXN1G-1438]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** esiliculosus_genome
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* Gene: [[Ec-04_004570]]
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***automated-name-match
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** Source: [[annotation-esiliculosus_genome]]
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* [[RXN1G-1439]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** esiliculosus_genome
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* Gene: [[Ec-22_001370]]
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***automated-name-match
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** Source: [[annotation-esiliculosus_genome]]
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* [[TREHALOSE6PSYN-RXN]]
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*** Assignment: GO-TERM
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** esiliculosus_genome
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* Gene: [[Ec-01_005810]]
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***ec-number
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** Source: [[annotation-esiliculosus_genome]]
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* [[TREHALOSEPHOSPHA-RXN]]
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*** Assignment: GO-TERM
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** esiliculosus_genome
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== Pathways ==
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***automated-name-match
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* [[PWY0-1479]], tRNA processing: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1479 PWY0-1479]
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== Pathways associated ==
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** '''2''' reactions found over '''10''' reactions in the full pathway
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* [[TREHALOSESYN-PWY]]
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== Reconstruction information  ==
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* [[PWYG-321]]
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* Category: [[annotation]]
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* [[PWY-881]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[TRESYN-PWY]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=2661380}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=ribonuclease P}}
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{{#set: right end position=2684911}}
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{{#set: common name=Ribonuclease P, Rpp40}}
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{{#set: centisome position=42.313587    }}
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{{#set: common name=RNAse P, Rpr2/Rpp21 subunit}}
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{{#set: common name=Esi_0048_0016|Esi0048_0016|TPS}}
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{{#set: ec number=EC-3.1.26.5}}
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{{#set: reaction associated=RXN1G-1435|RXN1G-1436|RXN1G-1437|RXN1G-1438|RXN1G-1439|TREHALOSE6PSYN-RXN|TREHALOSEPHOSPHA-RXN}}
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{{#set: gene associated=Ec-03_005340|Ec-04_004570|Ec-22_001370|Ec-01_005810}}
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{{#set: pathway associated=TREHALOSESYN-PWY|PWYG-321|PWY-881|TRESYN-PWY}}
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{{#set: in pathway=PWY0-1479}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:33, 21 March 2018

Reaction RXN0-6480

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ribonuclease P
    • Ribonuclease P, Rpp40
    • RNAse P, Rpr2/Rpp21 subunit
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a tRNA precursor with a 5' extension[c] + 1 H2O[c] => 1 an uncharged tRNA[c] + 1 a tRNA fragment[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1479, tRNA processing: PWY0-1479
    • 2 reactions found over 10 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=GLYOXIII-RXN&oldid=19576"