Difference between revisions of "GCVP-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5749 PWY-5749] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33154 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-O-ACETTRAN-RXN SERINE-O-ACETTRAN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Bac...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5749 PWY-5749] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-O-ACETTRAN-RXN SERINE-O-ACETTRAN-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33154 TAX-33154]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
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** itaconate degradation
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** Bacterial transferase hexapeptide repeat
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** Trimeric LpxA-like
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** Serine acetyltransferase, N-terminal
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.30 EC-2.3.1.30]
 
* Synonym(s):
 
* Synonym(s):
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** 2-methylsuccinate degradation
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''4''' reactions in the full pathway
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* With identifiers:
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* [[RXN-8988]]
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** 1 [[ACETYL-COA]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[ACETYLSERINE]][c] '''+''' 1 [[CO-A]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Ec-10_000030]]
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** 1 acetyl-CoA[c] '''+''' 1 L-serine[c] '''=>''' 1 O-acetyl-L-serine[c] '''+''' 1 coenzyme A[c]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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== Reaction(s) not found ==
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Genes have been associated with this reaction based on different elements listed below.
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* [http://metacyc.org/META/NEW-IMAGE?object=CITRAMALYL-COA-LYASE-RXN CITRAMALYL-COA-LYASE-RXN]
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* Gene: [[Ec-22_002810]]
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* [http://metacyc.org/META/NEW-IMAGE?object=ITACONYL-COA-HYDRATASE-RXN ITACONYL-COA-HYDRATASE-RXN]
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** Source: [[annotation-esiliculosus_genome]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8987 RXN-8987]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-00_004310]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-24_003520]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-01_001610]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[CYSTSYN-PWY]], L-cysteine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=CYSTSYN-PWY CYSTSYN-PWY]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7274]], D-cycloserine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7274 PWY-7274]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6936]], seleno-amino acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6936 PWY-6936]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-33154}}
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* RHEA:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24560 24560]
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{{#set: common name=itaconate degradation}}
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* LIGAND-RXN:
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{{#set: common name=2-methylsuccinate degradation}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00586 R00586]
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{{#set: reaction found=1}}
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* UNIPROT:
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{{#set: total reaction=4}}
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** [http://www.uniprot.org/uniprot/Q39533 Q39533]
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{{#set: completion rate=25.0}}
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** [http://www.uniprot.org/uniprot/Q06750 Q06750]
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** [http://www.uniprot.org/uniprot/P71405 P71405]
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** [http://www.uniprot.org/uniprot/Q9JR86 Q9JR86]
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** [http://www.uniprot.org/uniprot/Q9PPF6 Q9PPF6]
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** [http://www.uniprot.org/uniprot/P23145 P23145]
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** [http://www.uniprot.org/uniprot/Q9CEI8 Q9CEI8]
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** [http://www.uniprot.org/uniprot/P43886 P43886]
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** [http://www.uniprot.org/uniprot/P32003 P32003]
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** [http://www.uniprot.org/uniprot/P29847 P29847]
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** [http://www.uniprot.org/uniprot/Q42588 Q42588]
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** [http://www.uniprot.org/uniprot/Q39218 Q39218]
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** [http://www.uniprot.org/uniprot/Q42538 Q42538]
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** [http://www.uniprot.org/uniprot/P74089 P74089]
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** [http://www.uniprot.org/uniprot/Q8W2B8 Q8W2B8]
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** [http://www.uniprot.org/uniprot/Q8S895 Q8S895]
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** [http://www.uniprot.org/uniprot/P93544 P93544]
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** [http://www.uniprot.org/uniprot/O69218 O69218]
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** [http://www.uniprot.org/uniprot/O32979 O32979]
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** [http://www.uniprot.org/uniprot/P0A9D4 P0A9D4]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Bacterial transferase hexapeptide repeat}}
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{{#set: common name=Trimeric LpxA-like}}
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{{#set: common name=Serine acetyltransferase, N-terminal}}
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{{#set: ec number=EC-2.3.1.30}}
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{{#set: gene associated=Ec-22_002810|Ec-00_004310|Ec-24_003520|Ec-01_001610}}
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{{#set: in pathway=CYSTSYN-PWY|PWY-7274|PWY-6936}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 13:33, 21 March 2018

Reaction SERINE-O-ACETTRAN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Bacterial transferase hexapeptide repeat
    • Trimeric LpxA-like
    • Serine acetyltransferase, N-terminal
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 acetyl-CoA[c] + 1 L-serine[c] => 1 O-acetyl-L-serine[c] + 1 coenzyme A[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • CYSTSYN-PWY, L-cysteine biosynthesis I: CYSTSYN-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7274, D-cycloserine biosynthesis: PWY-7274
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6936, seleno-amino acid biosynthesis: PWY-6936
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=GCVP-RXN&oldid=19662"