Difference between revisions of "Ec-21 002310"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPTOPHAN--TRNA-LIGASE-RXN TRYPTOPHAN--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=S-ADENMETSYN-RXN S-ADENMETSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** S-Adenosyl-Me...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPTOPHAN--TRNA-LIGASE-RXN TRYPTOPHAN--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=S-ADENMETSYN-RXN S-ADENMETSYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Tryptophan--tRNA ligase
+
** S-Adenosyl-Methionine synthetase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.1.1.2 EC-6.1.1.2]
+
** [http://enzyme.expasy.org/EC/2.5.1.6 EC-2.5.1.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[TRP-tRNAs]][c] '''+''' 1 [[TRP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-TRP-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[MET]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 H+[c] '''+''' 1 a tRNAtrp[c] '''+''' 1 L-tryptophan[c] '''=>''' 1 AMP[c] '''+''' 1 an L-tryptophanyl-[tRNAtrp][c] '''+''' 1 diphosphate[c]
+
** 1 H2O[c] '''+''' 1 L-methionine[c] '''+''' 1 ATP[c] '''=>''' 1 S-adenosyl-L-methionine[c] '''+''' 1 diphosphate[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-08_005870]]
+
* Gene: [[Ec-06_008470]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[SAM-PWY]], S-adenosyl-L-methionine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SAM-PWY SAM-PWY]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[METHIONINE-DEG1-PWY]], L-methionine degradation I (to L-homocysteine): [http://metacyc.org/META/NEW-IMAGE?object=METHIONINE-DEG1-PWY METHIONINE-DEG1-PWY]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[ETHYL-PWY]], ethylene biosynthesis I (plants): [http://metacyc.org/META/NEW-IMAGE?object=ETHYL-PWY ETHYL-PWY]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5912]], 2'-deoxymugineic acid phytosiderophore biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5912 PWY-5912]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5041]], S-adenosyl-L-methionine cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5041 PWY-5041]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24080 24080]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21080 21080]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03664 R03664]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00177 R00177]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P23381 P23381]
+
** [http://www.uniprot.org/uniprot/P19358 P19358]
−
** [http://www.uniprot.org/uniprot/Q9ZD76 Q9ZD76]
+
** [http://www.uniprot.org/uniprot/P18298 P18298]
−
** [http://www.uniprot.org/uniprot/O84589 O84589]
+
** [http://www.uniprot.org/uniprot/Q91X83 Q91X83]
−
** [http://www.uniprot.org/uniprot/Q9PIB4 Q9PIB4]
+
** [http://www.uniprot.org/uniprot/Q9PNJ8 Q9PNJ8]
−
** [http://www.uniprot.org/uniprot/Q9CJD1 Q9CJD1]
+
** [http://www.uniprot.org/uniprot/P54419 P54419]
−
** [http://www.uniprot.org/uniprot/P43835 P43835]
+
** [http://www.uniprot.org/uniprot/P56460 P56460]
−
** [http://www.uniprot.org/uniprot/Q9Z7A4 Q9Z7A4]
+
** [http://www.uniprot.org/uniprot/Q9JVV6 Q9JVV6]
−
** [http://www.uniprot.org/uniprot/Q9WYW2 Q9WYW2]
+
** [http://www.uniprot.org/uniprot/Q9CEE0 Q9CEE0]
−
** [http://www.uniprot.org/uniprot/O26352 O26352]
+
** [http://www.uniprot.org/uniprot/O50163 O50163]
−
** [http://www.uniprot.org/uniprot/O51038 O51038]
+
** [http://www.uniprot.org/uniprot/P43762 P43762]
−
** [http://www.uniprot.org/uniprot/Q9ZJX4 Q9ZJX4]
+
** [http://www.uniprot.org/uniprot/P23686 P23686]
−
** [http://www.uniprot.org/uniprot/Q9JTQ0 Q9JTQ0]
+
** [http://www.uniprot.org/uniprot/P17562 P17562]
−
** [http://www.uniprot.org/uniprot/Q58810 Q58810]
+
** [http://www.uniprot.org/uniprot/Q7M4Y8 Q7M4Y8]
−
** [http://www.uniprot.org/uniprot/O83640 O83640]
+
** [http://www.uniprot.org/uniprot/Q9S992 Q9S992]
−
** [http://www.uniprot.org/uniprot/P67590 P67590]
+
** [http://www.uniprot.org/uniprot/Q90862 Q90862]
−
** [http://www.uniprot.org/uniprot/O67115 O67115]
+
** [http://www.uniprot.org/uniprot/P13444 P13444]
−
** [http://www.uniprot.org/uniprot/P47372 P47372]
+
** [http://www.uniprot.org/uniprot/P31153 P31153]
−
** [http://www.uniprot.org/uniprot/P32921 P32921]
+
** [http://www.uniprot.org/uniprot/Q00266 Q00266]
−
** [http://www.uniprot.org/uniprot/Q12109 Q12109]
+
** [http://www.uniprot.org/uniprot/P43281 P43281]
−
** [http://www.uniprot.org/uniprot/Q49901 Q49901]
+
** [http://www.uniprot.org/uniprot/P40320 P40320]
−
** [http://www.uniprot.org/uniprot/P75510 P75510]
+
** [http://www.uniprot.org/uniprot/P43280 P43280]
−
** [http://www.uniprot.org/uniprot/O42875 O42875]
+
** [http://www.uniprot.org/uniprot/P43282 P43282]
−
** [http://www.uniprot.org/uniprot/O96771 O96771]
+
** [http://www.uniprot.org/uniprot/P48498 P48498]
−
** [http://www.uniprot.org/uniprot/P17248 P17248]
+
** [http://www.uniprot.org/uniprot/P10659 P10659]
−
** [http://www.uniprot.org/uniprot/P21656 P21656]
+
** [http://www.uniprot.org/uniprot/Q39465 Q39465]
−
** [http://www.uniprot.org/uniprot/P04803 P04803]
+
** [http://www.uniprot.org/uniprot/P48466 P48466]
−
** [http://www.uniprot.org/uniprot/P00954 P00954]
+
** [http://www.uniprot.org/uniprot/P49612 P49612]
 +
** [http://www.uniprot.org/uniprot/P49613 P49613]
 +
** [http://www.uniprot.org/uniprot/P78003 P78003]
 +
** [http://www.uniprot.org/uniprot/Q49070 Q49070]
 +
** [http://www.uniprot.org/uniprot/P0A817 P0A817]
 +
** [http://www.uniprot.org/uniprot/P50299 P50299]
 +
** [http://www.uniprot.org/uniprot/O22350 O22350]
 +
** [http://www.uniprot.org/uniprot/P24260 P24260]
 +
** [http://www.uniprot.org/uniprot/O60198 O60198]
 +
** [http://www.uniprot.org/uniprot/Q12642 Q12642]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Tryptophan--tRNA ligase}}
+
{{#set: common name=S-Adenosyl-Methionine synthetase}}
−
{{#set: ec number=EC-6.1.1.2}}
+
{{#set: ec number=EC-2.5.1.6}}
−
{{#set: gene associated=Ec-08_005870}}
+
{{#set: gene associated=Ec-06_008470}}
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
{{#set: in pathway=SAM-PWY|METHIONINE-DEG1-PWY|ETHYL-PWY|PWY-5912|PWY-5041}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 13:34, 21 March 2018

Reaction S-ADENMETSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • S-Adenosyl-Methionine synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 L-methionine[c] + 1 ATP[c] => 1 S-adenosyl-L-methionine[c] + 1 diphosphate[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • SAM-PWY, S-adenosyl-L-methionine biosynthesis: SAM-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • METHIONINE-DEG1-PWY, L-methionine degradation I (to L-homocysteine): METHIONINE-DEG1-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • ETHYL-PWY, ethylene biosynthesis I (plants): ETHYL-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5912, 2'-deoxymugineic acid phytosiderophore biosynthesis: PWY-5912
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-5041, S-adenosyl-L-methionine cycle II: PWY-5041
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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