Difference between revisions of "Ec-12 003630"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5114 RXN0-5114] == * direction: ** LEFT-TO-RIGHT * common name: ** HAD-like domain * ec number...")
(Created page with "Category:Gene == Gene Ec-07_006780 == * left end position: ** 6516750 * transcription direction: ** NEGATIVE * right end position: ** 6518310 * centisome position: ** 84.3...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5114 RXN0-5114] ==
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== Gene Ec-07_006780 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 6516750
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* common name:
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* transcription direction:
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** HAD-like domain
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** NEGATIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/3.1.3.3 EC-3.1.3.3]
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** 6518310
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* centisome position:
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** 84.3873   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0110_0096
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** Esi0110_0096
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** GLYRS
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[GLYCINE--TRNA-LIGASE-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[3-P-SERINE]][c] '''=>''' 1 [[SER]][c] '''+''' 1 [[Pi]][c]
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* With common name(s):
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** 1 H2O[c] '''+''' 1 3-phospho-L-serine[c] '''=>''' 1 L-serine[c] '''+''' 1 phosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-18_001570]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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** [[pantograph]]-[[aragem]]
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== Pathways  ==
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* [[SERSYN-PWY]], L-serine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SERSYN-PWY SERSYN-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[TRNA-CHARGING-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=6516750}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21208 21208]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=6518310}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00582 R00582]
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{{#set: centisome position=84.3873    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Esi_0110_0096|Esi0110_0096|GLYRS}}
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{{#set: common name=HAD-like domain}}
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{{#set: reaction associated=GLYCINE--TRNA-LIGASE-RXN}}
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{{#set: ec number=EC-3.1.3.3}}
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{{#set: pathway associated=TRNA-CHARGING-PWY}}
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{{#set: gene associated=Ec-18_001570}}
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{{#set: in pathway=SERSYN-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 13:35, 21 March 2018

Gene Ec-07_006780

  • left end position:
    • 6516750
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 6518310
  • centisome position:
    • 84.3873
  • Synonym(s):
    • Esi_0110_0096
    • Esi0110_0096
    • GLYRS

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-12_003630&oldid=19868"