Difference between revisions of "RXN-14189"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DUMP DUMP] == * smiles: ** C(OP(=O)([O-])[O-])C1(OC(CC(O)1)N2(C=CC(=O)NC(=O)2)) * inchi key: **...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5114 RXN0-5114] == * direction: ** LEFT-TO-RIGHT * common name: ** HAD-like domain * ec number...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DUMP DUMP] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5114 RXN0-5114] ==
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* smiles:
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* direction:
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** C(OP(=O)([O-])[O-])C1(OC(CC(O)1)N2(C=CC(=O)NC(=O)2))
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=JSRLJPSBLDHEIO-SHYZEUOFSA-L
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* common name:
 
* common name:
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** dUMP
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** HAD-like domain
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* molecular weight:
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* ec number:
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** 306.168   
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** [http://enzyme.expasy.org/EC/3.1.3.3 EC-3.1.3.3]
 
* Synonym(s):
 
* Synonym(s):
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** U
 
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** deoxyurdine-phosphate
 
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** 2'-deoxyuridine 5-monophosphate
 
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** deoxyuridine-phosphate
 
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** 2'-deoxyuridine 5'-phosphate
 
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** 2'-deoxyuridylic acid
 
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** 2'-deoxy-5'-uridylic acid
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[THYMIDYLATESYN-RXN]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[3-P-SERINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[SER]][c] '''+''' 1 [[Pi]][c]
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* [[DUTP-PYROP-RXN]]
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* With common name(s):
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* [[RXN-14199]]
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** 1 3-phospho-L-serine[c] '''+''' 1 H2O[c] '''=>''' 1 L-serine[c] '''+''' 1 phosphate[c]
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* [[DCMP-DEAMINASE-RXN]]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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* [[RXN-14220]]
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-18_001570]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-aragem]]
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== Pathways  ==
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* [[SERSYN-PWY]], L-serine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SERSYN-PWY SERSYN-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 964-26-1
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* RHEA:
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* BIGG : 34762
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21208 21208]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=18601100 18601100]
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** [http://www.genome.jp/dbget-bin/www_bget?R00582 R00582]
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* HMDB : HMDB01409
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{{#set: direction=LEFT-TO-RIGHT}}
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* LIGAND-CPD:
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{{#set: common name=HAD-like domain}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00365 C00365]
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{{#set: ec number=EC-3.1.3.3}}
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* CHEMSPIDER:
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{{#set: gene associated=Ec-18_001570}}
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** [http://www.chemspider.com/Chemical-Structure.18555972.html 18555972]
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{{#set: in pathway=SERSYN-PWY}}
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* CHEBI:
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{{#set: reconstruction category=orthology|annotation}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=246422 246422]
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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* METABOLIGHTS : MTBLC246422
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: smiles=C(OP(=O)([O-])[O-])C1(OC(CC(O)1)N2(C=CC(=O)NC(=O)2))}}
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{{#set: inchi key=InChIKey=JSRLJPSBLDHEIO-SHYZEUOFSA-L}}
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{{#set: common name=dUMP}}
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{{#set: molecular weight=306.168    }}
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{{#set: common name=U|deoxyurdine-phosphate|2'-deoxyuridine 5-monophosphate|deoxyuridine-phosphate|2'-deoxyuridine 5'-phosphate|2'-deoxyuridylic acid|2'-deoxy-5'-uridylic acid}}
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{{#set: consumed by=THYMIDYLATESYN-RXN}}
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{{#set: produced by=DUTP-PYROP-RXN|RXN-14199|DCMP-DEAMINASE-RXN}}
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{{#set: reversible reaction associated=RXN-14220}}
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Revision as of 14:36, 21 March 2018

Reaction RXN0-5114

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • HAD-like domain
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3-phospho-L-serine[c] + 1 H2O[c] => 1 L-serine[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • SERSYN-PWY, L-serine biosynthesis: SERSYN-PWY
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-14189&oldid=20013"