Difference between revisions of "PWY-5"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DADPKIN-RXN DADPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** nucleoside diphosphate...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CHOCOLA_A CHOCOLA_A] == * smiles: ** CCCCCCCCCCCCCCCC(OCC=C(C=CC=C(C=CC1(C(CCCC=1C)(C)C))C)C)=O...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DADPKIN-RXN DADPKIN-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CHOCOLA_A CHOCOLA_A] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CCCCCCCCCCCCCCCC(OCC=C(C=CC=C(C=CC1(C(CCCC=1C)(C)C))C)C)=O
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* inchi key:
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** InChIKey=VYGQUTWHTHXGQB-FFHKNEKCSA-N
 
* common name:
 
* common name:
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** nucleoside diphosphate kinase
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** all-trans-retinyl palmitate
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** Nucleoside diphosphate kinase
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* molecular weight:
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* ec number:
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** 524.869   
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** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
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* Synonym(s):
 
* Synonym(s):
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** chocola A
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** aquasol A
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** vitamin A palmitate
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** retinol-palmitate
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[3.1.1.64-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[DADP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DATP]][c]
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* [[RETINYL-PALMITATE-ESTERASE-RXN]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1 ATP[c] '''+''' 1 dADP[c] '''=>''' 1 ADP[c] '''+''' 1 dATP[c]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-07_000140]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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* [[Ec-04_001140]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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** [[pantograph]]-[[aragem]]
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* [[Ec-03_001380]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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* [[Ec-11_004330]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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** [[pantograph]]-[[aragem]]
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* [[Ec-26_003930]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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* [[Ec-22_003280]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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* [[Ec-11_005170]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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== Pathways  ==
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* [[PWY-7220]], adenosine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7220 PWY-7220]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7224]], purine deoxyribonucleosides salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7224 PWY-7224]
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** '''2''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7227]], adenosine deoxyribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7227 PWY-7227]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* CAS : 79-81-2
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27674 27674]
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* LIPID_MAPS : LMPR01090013
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* LIGAND-RXN:
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* PUBCHEM:
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** [http://www.genome.jp/dbget-bin/www_bget?R01137 R01137]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5280531 5280531]
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{{#set: direction=LEFT-TO-RIGHT}}
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* HMDB : HMDB03648
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{{#set: common name=nucleoside diphosphate kinase}}
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* LIGAND-CPD:
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{{#set: common name=Nucleoside diphosphate kinase}}
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** [http://www.genome.jp/dbget-bin/www_bget?C02588 C02588]
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{{#set: ec number=EC-2.7.4.6}}
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* CHEMSPIDER:
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{{#set: gene associated=Ec-07_000140|Ec-04_001140|Ec-03_001380|Ec-11_004330|Ec-26_003930|Ec-22_003280|Ec-11_005170}}
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** [http://www.chemspider.com/Chemical-Structure.4444162.html 4444162]
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{{#set: in pathway=PWY-7220|PWY-7224|PWY-7227}}
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* CHEBI:
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{{#set: reconstruction category=orthology|annotation}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=17616 17616]
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: smiles=CCCCCCCCCCCCCCCC(OCC=C(C=CC=C(C=CC1(C(CCCC=1C)(C)C))C)C)=O}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: inchi key=InChIKey=VYGQUTWHTHXGQB-FFHKNEKCSA-N}}
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{{#set: common name=all-trans-retinyl palmitate}}
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{{#set: molecular weight=524.869    }}
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{{#set: common name=chocola A|aquasol A|vitamin A palmitate|retinol-palmitate}}
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{{#set: consumed by=3.1.1.64-RXN|RETINYL-PALMITATE-ESTERASE-RXN}}

Revision as of 13:36, 21 March 2018

Metabolite CHOCOLA_A

  • smiles:
    • CCCCCCCCCCCCCCCC(OCC=C(C=CC=C(C=CC1(C(CCCC=1C)(C)C))C)C)=O
  • inchi key:
    • InChIKey=VYGQUTWHTHXGQB-FFHKNEKCSA-N
  • common name:
    • all-trans-retinyl palmitate
  • molecular weight:
    • 524.869
  • Synonym(s):
    • chocola A
    • aquasol A
    • vitamin A palmitate
    • retinol-palmitate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 79-81-2
  • LIPID_MAPS : LMPR01090013
  • PUBCHEM:
  • HMDB : HMDB03648
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:




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