Difference between revisions of "RXN-17797"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10039 RXN-10039] == * direction: ** LEFT-TO-RIGHT * common name: ** O-phosphoseryl-tRNA(Sec) se...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10039 RXN-10039] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** TCA cycle III (animals)
+
** O-phosphoseryl-tRNA(Sec) selenium transferase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.9.1.2 EC-2.9.1.2]
 
* Synonym(s):
 
* Synonym(s):
−
** tricarboxylic acid cycle
 
−
** citric acid cycle
 
−
** Szent-Gyorgyi-Krebs cycle
 
−
** Krebs cycle
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''10''' reactions found over '''11''' reactions in the full pathway
+
* With identifiers:
−
* [[2OXOGLUTDECARB-RXN]]
+
** 1 [[SEPO3]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[O-phospho-L-seryl-tRNASecs]][c] '''=>''' 2 [[Pi]][c] '''+''' 1 [[Charged-SEC-tRNAs]][c]
−
** 4 associated gene(s):
+
* With common name(s):
−
*** [[Ec-25_000020]]
+
** 1 selenophosphate[c] '''+''' 1 H2O[c] '''+''' 1 an O-phospho-L-seryl-[tRNASec][c] '''=>''' 2 phosphate[c] '''+''' 1 an L-selenocysteinyl-[tRNAsec][c]
−
*** [[Ec-27_004160]]
+
 
−
*** [[Ec-21_002310]]
+
== Genes associated with this reaction  ==
−
*** [[Ec-21_002300]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** 1 reconstruction source(s) associated:
+
* Gene: [[Ec-14_006440]]
−
*** [[annotation-esiliculosus_genome]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[ACONITATEDEHYDR-RXN]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** 2 associated gene(s):
+
== Pathways  ==
−
*** [[Ec-16_001000]]
+
* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281]
−
*** [[Ec-12_000170]]
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
** 1 reconstruction source(s) associated:
+
== Reconstruction information  ==
−
*** [[annotation-esiliculosus_genome]]
+
* Category: [[annotation]]
−
* [[ACONITATEHYDR-RXN]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** 2 associated gene(s):
+
*** Tool: [[pathwaytools]]
−
*** [[Ec-12_000170]]
+
−
*** [[Ec-16_001000]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[CITSYN-RXN]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[FUMHYDR-RXN]]
+
−
** 2 associated gene(s):
+
−
*** [[Ec-23_003460]]
+
−
*** [[Ec-25_001360]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
*** [[orthology-aragem]]
+
−
* [[MALATE-DEH-RXN]]
+
−
** 2 associated gene(s):
+
−
*** [[Ec-10_006200]]
+
−
*** [[Ec-02_003100]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
*** [[orthology-aragem]]
+
−
* [[RXN0-1147]]
+
−
** 3 associated gene(s):
+
−
*** [[Ec-21_002300]]
+
−
*** [[Ec-25_000020]]
+
−
*** [[Ec-27_004160]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[SUCCCOASYN-RXN]]
+
−
** 2 associated gene(s):
+
−
*** [[Ec-10_000030]]
+
−
*** [[Ec-02_001020]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
*** [[orthology-aragem]]
+
−
* [[SUCCINATE--COA-LIGASE-GDP-FORMING-RXN]]
+
−
** 1 associated gene(s):
+
−
*** [[Ec-10_000030]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN]]
+
−
** 6 associated gene(s):
+
−
*** [[Ec-07_002870]]
+
−
*** [[Ec-07_007310]]
+
−
*** [[Ec-11_000360]]
+
−
*** [[Ec-21_003470]]
+
−
*** [[Ec-05_003640]]
+
−
*** [[Ec-27_006560]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
== Reaction(s) not found ==
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=ISOCITRATE-DEHYDROGENASE-NAD+-RXN ISOCITRATE-DEHYDROGENASE-NAD+-RXN]
+
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-33208}}
+
* LIGAND-RXN:
−
{{#set: common name=TCA cycle III (animals)}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R08224 R08224]
−
{{#set: common name=tricarboxylic acid cycle|citric acid cycle|Szent-Gyorgyi-Krebs cycle|Krebs cycle}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: reaction found=10}}
+
{{#set: common name=O-phosphoseryl-tRNA(Sec) selenium transferase}}
−
{{#set: total reaction=11}}
+
{{#set: ec number=EC-2.9.1.2}}
−
{{#set: completion rate=91.0}}
+
{{#set: gene associated=Ec-14_006440}}
 +
{{#set: in pathway=PWY-6281}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:37, 21 March 2018

Reaction RXN-10039

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • O-phosphoseryl-tRNA(Sec) selenium transferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6281, L-selenocysteine biosynthesis II (archaea and eukaryotes): PWY-6281
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-17797&oldid=20202"