Difference between revisions of "CPD-11878"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9839 RXN-9839] == * direction: ** LEFT-TO-RIGHT * common name: ** Mannuronan C-5-epimerase ** M...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15278 RXN-15278] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9839 RXN-9839] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15278 RXN-15278] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
* common name:
 
** Mannuronan C-5-epimerase
 
** Mannuronan C-5-epimerase 4
 
 
* ec number:
 
* ec number:
** [http://enzyme.expasy.org/EC/5.1.3.37 EC-5.1.3.37]
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** [http://enzyme.expasy.org/EC/2.4.1.38 EC-2.4.1.38]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1 [[Poly-beta-D-Mannuronate]][c] '''=>''' 1 [[ALGINATE]][c]
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** 1 [[CPD-16494]][c] '''+''' 1 [[CPD-14553]][c] '''=>''' 1 [[UDP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[I-antigens]][c]
 
* With common name(s):
 
* With common name(s):
** 1 mannuronan[c] '''=>''' 1 alginate[c]
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** 1 N-acetyl-β-D-galactosyl-(1,4)-[N-acetyl-β-D-glucosyl-(1,6)]-N-acetyl-β-D-glucosaminyl-(1,3)-β-D-galactosyl-(1,4)-N-acetyl-β-D-glucosaminyl-R[c] '''+''' 1 UDP-α-D-galactose[c] '''=>''' 1 UDP[c] '''+''' 1 H+[c] '''+''' 1 I antigen[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
Genes have been associated with this reaction based on different elements listed below.
 
* [[Ec-27_006700]]
 
** ESILICULOSUS_GENOME
 
***AUTOMATED-NAME-MATCH
 
* [[Ec-24_002750]]
 
** ESILICULOSUS_GENOME
 
***AUTOMATED-NAME-MATCH
 
* [[Ec-20_004700]]
 
** ESILICULOSUS_GENOME
 
***AUTOMATED-NAME-MATCH
 
* [[Ec-11_000400]]
 
** ESILICULOSUS_GENOME
 
***AUTOMATED-NAME-MATCH
 
* [[Ec-08_004820]]
 
** ESILICULOSUS_GENOME
 
***AUTOMATED-NAME-MATCH
 
* [[Ec-12_000360]]
 
** ESILICULOSUS_GENOME
 
***AUTOMATED-NAME-MATCH
 
* [[Ec-25_001850]]
 
** ESILICULOSUS_GENOME
 
***AUTOMATED-NAME-MATCH
 
* [[Ec-06_006700]]
 
** ESILICULOSUS_GENOME
 
***AUTOMATED-NAME-MATCH
 
* [[Ec-07_000890]]
 
** ESILICULOSUS_GENOME
 
***AUTOMATED-NAME-MATCH
 
* [[Ec-19_003150]]
 
** ESILICULOSUS_GENOME
 
***AUTOMATED-NAME-MATCH
 
* [[Ec-09_003950]]
 
** ESILICULOSUS_GENOME
 
***AUTOMATED-NAME-MATCH
 
 
== Pathways  ==
 
== Pathways  ==
* [[PWY-6082]], alginate biosynthesis II (bacterial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6082 PWY-6082]
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* [[PWY-7434]], terminal O-glycans residues modification: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7434 PWY-7434]
** '''2''' reactions found over '''7''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
* [[PWY-6073]], alginate biosynthesis I (algal): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6073 PWY-6073]
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** '''2''' reactions found over '''3''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=Mannuronan C-5-epimerase}}
+
{{#set: ec number=EC-2.4.1.38}}
{{#set: common name=Mannuronan C-5-epimerase 4}}
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{{#set: in pathway=PWY-7434}}
{{#set: ec number=EC-5.1.3.37}}
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{{#set: gene associated=Ec-27_006700|Ec-24_002750|Ec-20_004700|Ec-11_000400|Ec-08_004820|Ec-12_000360|Ec-25_001850|Ec-06_006700|Ec-07_000890|Ec-19_003150|Ec-09_003950}}
+
{{#set: in pathway=PWY-6082|PWY-6073}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:39, 21 March 2018

Reaction RXN-15278

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 N-acetyl-β-D-galactosyl-(1,4)-[N-acetyl-β-D-glucosyl-(1,6)]-N-acetyl-β-D-glucosaminyl-(1,3)-β-D-galactosyl-(1,4)-N-acetyl-β-D-glucosaminyl-R[c] + 1 UDP-α-D-galactose[c] => 1 UDP[c] + 1 H+[c] + 1 I antigen[c]

Genes associated with this reaction

Pathways

  • PWY-7434, terminal O-glycans residues modification: PWY-7434
    • 10 reactions found over 10 reactions in the full pathway

Reconstruction information

External links