Difference between revisions of "PWY-5390"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5298 PWY-5298] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12270 RXN-12270] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycosyl hydrolase, family...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5298 PWY-5298] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12270 RXN-12270] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
+
** LEFT-TO-RIGHT
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
+
 
* common name:
 
* common name:
−
** L-lysine degradation VI
+
** Glycosyl hydrolase, family 88
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.2.1.179 EC-3.2.1.179]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''1''' reactions found over '''3''' reactions in the full pathway
+
* With identifiers:
−
* [[RXN-8173]]
+
** 1 [[WATER]][c] '''+''' 1 [[CPD-13187]][c] '''=>''' 1 [[CPD-13122]][c] '''+''' 1 [[CPD-13188]][c]
−
** 0 associated gene:
+
* With common name(s):
−
** 1 reconstruction source(s) associated:
+
** 1 H2O[c] '''+''' 1 unsaturated gellan tetrasaccharide[c] '''=>''' 1 4-deoxy-L-threo-hex-4-enopyranuronate[c] '''+''' 1 β-D-Glcp-(1→4)-α-L-Rhap-(1→3)-β-D-Glcp[c]
−
*** [[annotation-esiliculosus_genome]]
+
 
−
== Reaction(s) not found ==
+
== Genes associated with this reaction  ==
−
* [http://metacyc.org/META/NEW-IMAGE?object=L-LYSINE-AMINOTRANSFERASE-RXN L-LYSINE-AMINOTRANSFERASE-RXN]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8162 RXN-8162]
+
* Gene: [[Ec-02_002980]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-02_002970]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways  ==
 +
* [[PWY-6827]], gellan degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6827 PWY-6827]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-201174}}
+
* RHEA:
−
{{#set: taxonomic range=TAX-1224}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31638 31638]
−
{{#set: common name=L-lysine degradation VI}}
+
* LIGAND-RXN:
−
{{#set: reaction found=1}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R09831 R09831]
−
{{#set: total reaction=3}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: completion rate=33.0}}
+
{{#set: common name=Glycosyl hydrolase, family 88}}
 +
{{#set: ec number=EC-3.2.1.179}}
 +
{{#set: gene associated=Ec-02_002980|Ec-02_002970}}
 +
{{#set: in pathway=PWY-6827}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 14:39, 21 March 2018

Reaction RXN-12270

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glycosyl hydrolase, family 88
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 unsaturated gellan tetrasaccharide[c] => 1 4-deoxy-L-threo-hex-4-enopyranuronate[c] + 1 β-D-Glcp-(1→4)-α-L-Rhap-(1→3)-β-D-Glcp[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6827, gellan degradation: PWY-6827
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-5390&oldid=20463"