Difference between revisions of "PWY-5390"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5298 PWY-5298] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12270 RXN-12270] == * direction: ** LEFT-TO-RIGHT * common name: ** Glycosyl hydrolase, family...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5298 PWY-5298] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12270 RXN-12270] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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* common name:
 
* common name:
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** L-lysine degradation VI
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** Glycosyl hydrolase, family 88
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* ec number:
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** [http://enzyme.expasy.org/EC/3.2.1.179 EC-3.2.1.179]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''3''' reactions in the full pathway
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* With identifiers:
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* [[RXN-8173]]
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** 1 [[WATER]][c] '''+''' 1 [[CPD-13187]][c] '''=>''' 1 [[CPD-13122]][c] '''+''' 1 [[CPD-13188]][c]
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** 0 associated gene:
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* With common name(s):
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** 1 reconstruction source(s) associated:
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** 1 H2O[c] '''+''' 1 unsaturated gellan tetrasaccharide[c] '''=>''' 1 4-deoxy-L-threo-hex-4-enopyranuronate[c] '''+''' 1 β-D-Glcp-(1→4)-α-L-Rhap-(1→3)-β-D-Glcp[c]
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*** [[annotation-esiliculosus_genome]]
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== Reaction(s) not found ==
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== Genes associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=L-LYSINE-AMINOTRANSFERASE-RXN L-LYSINE-AMINOTRANSFERASE-RXN]
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Genes have been associated with this reaction based on different elements listed below.
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8162 RXN-8162]
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* Gene: [[Ec-02_002980]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-02_002970]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-6827]], gellan degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6827 PWY-6827]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-201174}}
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* RHEA:
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{{#set: taxonomic range=TAX-1224}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31638 31638]
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{{#set: common name=L-lysine degradation VI}}
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* LIGAND-RXN:
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{{#set: reaction found=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R09831 R09831]
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{{#set: total reaction=3}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=33.0}}
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{{#set: common name=Glycosyl hydrolase, family 88}}
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{{#set: ec number=EC-3.2.1.179}}
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{{#set: gene associated=Ec-02_002980|Ec-02_002970}}
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{{#set: in pathway=PWY-6827}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:39, 21 March 2018

Reaction RXN-12270

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Glycosyl hydrolase, family 88
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 unsaturated gellan tetrasaccharide[c] => 1 4-deoxy-L-threo-hex-4-enopyranuronate[c] + 1 β-D-Glcp-(1→4)-α-L-Rhap-(1→3)-β-D-Glcp[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6827, gellan degradation: PWY-6827
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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