Difference between revisions of "RXN-17008"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=H2PTEROATESYNTH-RXN H2PTEROATESYNTH-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://e...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2OXOGLUTDECARB-RXN 2OXOGLUTDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** dihydroli...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=H2PTEROATESYNTH-RXN H2PTEROATESYNTH-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2OXOGLUTDECARB-RXN 2OXOGLUTDECARB-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** dihydrolipoamide dehydrogenase
 +
** Oxoglutarate dehydrogenase, N-terminal part
 +
** 2-oxoglutarate dehydrogenase E1 component
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.15 EC-2.5.1.15]
+
** [http://enzyme.expasy.org/EC/1.2.4.2 EC-1.2.4.2]
 
* Synonym(s):
 
* Synonym(s):
 +
** Oxoglutarate decarboxylase
 +
** 2-oxoglutarate decarboxylation
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[P-AMINO-BENZOATE]][c] '''+''' 1 [[DIHYDROPTERIN-CH2OH-PP]][c] '''=>''' 1 [[7-8-DIHYDROPTEROATE]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Oxo-glutarate-dehydrogenase-lipoyl]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Oxo-glutarate-dehydro-suc-DH-lipoyl]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 4-aminobenzoate[c] '''+''' 1 (7,8-dihydropterin-6-yl)methyl diphosphate[c] '''=>''' 1 7,8-dihydropteroate[c] '''+''' 1 diphosphate[c]
+
** 1 2-oxoglutarate[c] '''+''' 1 H+[c] '''+''' 1 a [2-oxoglutarate dehydrogenase E2 protein] N6-lipoyl-L-lysine[c] '''=>''' 1 CO2[c] '''+''' 1 a [2-oxoglutarate dehydrogenase E2 protein] N6-S-succinyldihydrolipoyl-L-lysine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-12_000230]]
+
* Gene: [[Ec-25_000020]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-21_002310]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-21_002300]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-27_004160]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6614]], tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6614 PWY-6614]
+
* [[PWY-5084]], 2-oxoglutarate decarboxylation to succinyl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5084 PWY-5084]
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[annotation]]
−
** Source: [[orthology-aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
−
*** Tool: [[pantograph]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19949 19949]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03067 R03067]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P0AC11 P0AC11]
+
** [http://www.uniprot.org/uniprot/P23129 P23129]
−
** [http://www.uniprot.org/uniprot/P0AC13 P0AC13]
+
** [http://www.uniprot.org/uniprot/Q02218 Q02218]
−
** [http://www.uniprot.org/uniprot/Q05851 Q05851]
+
** [http://www.uniprot.org/uniprot/Q60597 Q60597]
−
** [http://www.uniprot.org/uniprot/Q25704 Q25704]
+
** [http://www.uniprot.org/uniprot/Q9JRJ8 Q9JRJ8]
−
** [http://www.uniprot.org/uniprot/P0A578 P0A578]
+
** [http://www.uniprot.org/uniprot/P20967 P20967]
−
** [http://www.uniprot.org/uniprot/O84619 O84619]
+
** [http://www.uniprot.org/uniprot/P0AFG3 P0AFG3]
−
** [http://www.uniprot.org/uniprot/P0C003 P0C003]
+
** [http://www.uniprot.org/uniprot/P20707 P20707]
−
** [http://www.uniprot.org/uniprot/Q9ZJZ4 Q9ZJZ4]
+
** [http://www.uniprot.org/uniprot/P51056 P51056]
−
** [http://www.uniprot.org/uniprot/Q9CGE2 Q9CGE2]
+
** [http://www.uniprot.org/uniprot/Q56600 Q56600]
−
** [http://www.uniprot.org/uniprot/Q9JT70 Q9JT70]
+
** [http://www.uniprot.org/uniprot/O49541 O49541]
−
** [http://www.uniprot.org/uniprot/P43776 P43776]
+
** [http://www.uniprot.org/uniprot/Q59106 Q59106]
−
** [http://www.uniprot.org/uniprot/P64139 P64139]
+
** [http://www.uniprot.org/uniprot/Q9M2T8 Q9M2T8]
−
** [http://www.uniprot.org/uniprot/Q9WXP7 Q9WXP7]
+
** [http://www.uniprot.org/uniprot/Q9ZRQ2 Q9ZRQ2]
−
** [http://www.uniprot.org/uniprot/O67448 O67448]
+
−
** [http://www.uniprot.org/uniprot/P28822 P28822]
+
−
** [http://www.uniprot.org/uniprot/Q9Z7E8 Q9Z7E8]
+
−
** [http://www.uniprot.org/uniprot/P82602 P82602]
+
−
** [http://www.uniprot.org/uniprot/O25830 O25830]
+
−
** [http://www.uniprot.org/uniprot/Q9RXY6 Q9RXY6]
+
−
** [http://www.uniprot.org/uniprot/Q9PHT1 Q9PHT1]
+
−
** [http://www.uniprot.org/uniprot/Q52352 Q52352]
+
−
** [http://www.uniprot.org/uniprot/Q49184 Q49184]
+
−
** [http://www.uniprot.org/uniprot/Q51161 Q51161]
+
−
** [http://www.uniprot.org/uniprot/P73248 P73248]
+
−
** [http://www.uniprot.org/uniprot/P0C002 P0C002]
+
−
** [http://www.uniprot.org/uniprot/O04862 O04862]
+
−
** [http://www.uniprot.org/uniprot/Q9SZV3 Q9SZV3]
+
−
** [http://www.uniprot.org/uniprot/Q9X8H8 Q9X8H8]
+
−
** [http://www.uniprot.org/uniprot/O75013 O75013]
+
−
** [http://www.uniprot.org/uniprot/P0C0X2 P0C0X2]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-2.5.1.15}}
+
{{#set: common name=dihydrolipoamide dehydrogenase}}
−
{{#set: gene associated=Ec-12_000230}}
+
{{#set: common name=Oxoglutarate dehydrogenase, N-terminal part}}
−
{{#set: in pathway=PWY-6614}}
+
{{#set: common name=2-oxoglutarate dehydrogenase E1 component}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: ec number=EC-1.2.4.2}}
−
{{#set: reconstruction source=orthology-aragem}}
+
{{#set: common name=Oxoglutarate decarboxylase|2-oxoglutarate decarboxylation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: gene associated=Ec-25_000020|Ec-21_002310|Ec-21_002300|Ec-27_004160}}
 +
{{#set: in pathway=PWY-5084|PWY66-398}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:40, 21 March 2018

Reaction 2OXOGLUTDECARB-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • dihydrolipoamide dehydrogenase
    • Oxoglutarate dehydrogenase, N-terminal part
    • 2-oxoglutarate dehydrogenase E1 component
  • ec number:
  • Synonym(s):
    • Oxoglutarate decarboxylase
    • 2-oxoglutarate decarboxylation

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5084, 2-oxoglutarate decarboxylation to succinyl-CoA: PWY-5084
    • 3 reactions found over 3 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 10 reactions found over 11 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-17008&oldid=20616"