Difference between revisions of "D-GLUCARATE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1121 RXN-1121] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With id...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9644 RXN-9644] == * direction: ** LEFT-TO-RIGHT * common name: ** long chain acyl-coA synthetas...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1121 RXN-1121] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9644 RXN-9644] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** long chain acyl-coA synthetase
 +
** long chain acyl-CoA synthetase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[FERULIC-ACID]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[5-HYDROXY-FERULIC-ACID]][c] '''+''' 1 [[WATER]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[OLEATE-CPD]][c] '''=>''' 1 [[OLEOYL-COA]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ferulate[c] '''+''' 1 NADPH[c] '''+''' 1 oxygen[c] '''+''' 1 H+[c] '''=>''' 1 NADP+[c] '''+''' 1 5-hydroxyferulate[c] '''+''' 1 H2O[c]
+
** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 oleate[c] '''=>''' 1 oleoyl-CoA[c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-00_005850]]
+
* Gene: [[Ec-02_006430]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[Ec-10_006240]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[aragem]]
+
* Gene: [[Ec-03_003710]]
−
* [[Ec-00_005820]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** [[pantograph]]-[[aragem]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Ec-07_001290]]
+
* Gene: [[Ec-01_001560]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-12_008720]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-2181]], free phenylpropanoid acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2181 PWY-2181]
+
* [[PWY-5147]], oleate biosynthesis I (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5147 PWY-5147]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6001]], linoleate biosynthesis II (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6001 PWY-6001]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[annotation]]
−
** Source: [[orthology-aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
−
*** Tool: [[pantograph]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R07440 R07440]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=Ec-00_005850|Ec-10_006240|Ec-00_005820|Ec-07_001290}}
+
{{#set: common name=long chain acyl-coA synthetase}}
−
{{#set: in pathway=PWY-2181}}
+
{{#set: common name=long chain acyl-CoA synthetase}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: ec number=EC-6.2.1.3}}
−
{{#set: reconstruction source=orthology-aragem}}
+
{{#set: gene associated=Ec-02_006430|Ec-03_003710|Ec-01_001560|Ec-12_008720}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: in pathway=PWY-5147|PWY-6001}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:41, 21 March 2018

Reaction RXN-9644

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • long chain acyl-coA synthetase
    • long chain acyl-CoA synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 coenzyme A[c] + 1 oleate[c] => 1 oleoyl-CoA[c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5147, oleate biosynthesis I (plants): PWY-5147
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6001, linoleate biosynthesis II (animals): PWY-6001
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=D-GLUCARATE&oldid=20718"