Difference between revisions of "RXN-7913"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** GDP-mannose...")
(Created page with "Category:Gene == Gene Ec-11_006230 == * left end position: ** 6182280 * transcription direction: ** NEGATIVE * right end position: ** 6187237 * centisome position: ** 98.2...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] ==
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== Gene Ec-11_006230 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 6182280
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* common name:
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* transcription direction:
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** GDP-mannose 4,6-dehydratase
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** NEGATIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/4.2.1.47 EC-4.2.1.47]
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** 6187237
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* centisome position:
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** 98.292786   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0031_0150
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** Esi0031_0150
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[PANTOTHENATE-KIN-RXN]]
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** 1 [[GDP-MANNOSE]][c] '''=>''' 1 [[GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE]][c] '''+''' 1 [[WATER]][c]
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* With common name(s):
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** 1 GDP-α-D-mannose[c] '''=>''' 1 GDP-4-dehydro-6-deoxy-α-D-mannose[c] '''+''' 1 H2O[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-11_005510]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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** [[pantograph]]-[[aragem]]
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* [[Ec-28_003400]]
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** ESILICULOSUS_GENOME
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***GO-TERM
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** [[pantograph]]-[[aragem]]
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== Pathways  ==
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* [[GDPRHAMSYN-PWY]], GDP-D-rhamnose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=GDPRHAMSYN-PWY GDPRHAMSYN-PWY]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-66]], GDP-L-fucose biosynthesis I (from GDP-D-mannose): [http://metacyc.org/META/NEW-IMAGE?object=PWY-66 PWY-66]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5740]], GDP-L-colitose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5740 PWY-5740]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7573]], GDP-mycosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7573 PWY-7573]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5738]], GDP-6-deoxy-D-talose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5738 PWY-5738]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5739]], GDP-D-perosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5739 PWY-5739]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
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* [[PANTO-PWY]]
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* [[PWY-3961]]
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* [[COA-PWY-1]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=6182280}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23820 23820]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=6187237}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00888 R00888]
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{{#set: centisome position=98.292786    }}
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* UNIPROT:
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{{#set: common name=Esi_0031_0150|Esi0031_0150}}
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** [http://www.uniprot.org/uniprot/Q84439 Q84439]
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{{#set: reaction associated=PANTOTHENATE-KIN-RXN}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: pathway associated=PANTO-PWY|PWY-3961|COA-PWY-1}}
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{{#set: common name=GDP-mannose 4,6-dehydratase}}
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{{#set: ec number=EC-4.2.1.47}}
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{{#set: gene associated=Ec-11_005510|Ec-28_003400}}
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{{#set: in pathway=GDPRHAMSYN-PWY|PWY-66|PWY-5740|PWY-7573|PWY-5738|PWY-5739}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 13:41, 21 March 2018

Gene Ec-11_006230

  • left end position:
    • 6182280
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 6187237
  • centisome position:
    • 98.292786
  • Synonym(s):
    • Esi_0031_0150
    • Esi0031_0150

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-7913&oldid=20824"