Difference between revisions of "DISULISOM-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Ec-08_006390 == * left end position: ** 6205624 * transcription direction: ** POSITIVE * right end position: ** 6216159 * centisome position: ** 92.6...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12263 RXN-12263] == * direction: ** LEFT-TO-RIGHT * common name: ** Isopentenyl-diphosphate del...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Ec-08_006390 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12263 RXN-12263] ==
−
* left end position:
+
* direction:
−
** 6205624
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs
−
* right end position:
+
* ec number:
−
** 6216159
+
** [http://enzyme.expasy.org/EC/2.5.1.103 EC-2.5.1.103]
−
* centisome position:
+
−
** 92.661835   
+
 
* Synonym(s):
 
* Synonym(s):
−
** Esi_0005_0083
 
−
** Esi0005_0083
 
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[ACYL-COA-OXIDASE-RXN]]
+
* With identifiers:
−
** esiliculosus_genome
+
** 2 [[FARNESYL-PP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-465]][c]
−
***automated-name-match
+
* With common name(s):
−
* [[ACYLCOADEHYDROG-RXN]]
+
** 2 (2E,6E)-farnesyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 presqualene diphosphate[c]
−
** esiliculosus_genome
+
 
−
***go-term
+
== Genes associated with this reaction  ==
−
* [[LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** esiliculosus_genome
+
* Gene: [[Ec-11_001030]]
−
***go-term
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[RXN-10696]]
+
*** Assignment: EC-NUMBER
−
** esiliculosus_genome
+
** Source: [[orthology-aragem]]
−
***automated-name-match
+
== Pathways  ==
−
* [[RXN-10706]]
+
* [[PWY-7072]], hopanoid biosynthesis (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7072 PWY-7072]
−
** esiliculosus_genome
+
** '''1''' reactions found over '''14''' reactions in the full pathway
−
***automated-name-match
+
* [[PWY-6105]], botryococcenes and methylated squalene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6105 PWY-6105]
−
* [[RXN-10707]]
+
** '''2''' reactions found over '''9''' reactions in the full pathway
−
** esiliculosus_genome
+
* [[PWY-6767]], 4,4'-diapolycopenedioate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6767 PWY-6767]
−
***automated-name-match
+
** '''1''' reactions found over '''9''' reactions in the full pathway
−
* [[RXN-11026]]
+
* [[PWY-5875]], staphyloxanthin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5875 PWY-5875]
−
** esiliculosus_genome
+
** '''1''' reactions found over '''9''' reactions in the full pathway
−
***automated-name-match
+
== Reconstruction information  ==
−
* [[RXN-12518]]
+
* Category: [[orthology]]
−
** esiliculosus_genome
+
** Source: [[orthology-aragem]]
−
***automated-name-match
+
*** Tool: [[pantograph]]
−
* [[RXN-12669]]
+
* Category: [[annotation]]
−
** esiliculosus_genome
+
** Source: [[annotation-esiliculosus_genome]]
−
***automated-name-match
+
*** Tool: [[pathwaytools]]
−
* [[RXN-14264]]
+
−
** [[pantograph]]-[[aragem]]
+
−
* [[RXN-14576]]
+
−
** esiliculosus_genome
+
−
***automated-name-match
+
−
* [[RXN-14771]]
+
−
** esiliculosus_genome
+
−
***automated-name-match
+
−
* [[RXN-14775]]
+
−
** esiliculosus_genome
+
−
***automated-name-match
+
−
* [[RXN-14785]]
+
−
** esiliculosus_genome
+
−
***automated-name-match
+
−
* [[RXN-14789]]
+
−
** esiliculosus_genome
+
−
***automated-name-match
+
−
* [[RXN-14796]]
+
−
** esiliculosus_genome
+
−
***automated-name-match
+
−
* [[RXN-16134]]
+
−
** esiliculosus_genome
+
−
***automated-name-match
+
−
* [[RXN-17113]]
+
−
** esiliculosus_genome
+
−
***automated-name-match
+
−
== Pathways associated ==
+
−
* [[PWY-6920]]
+
−
* [[PWY-7340]]
+
−
* [[PWY-7291]]
+
−
* [[PWY-735]]
+
−
* [[PWY-7606]]
+
−
* [[PWY-7338]]
+
−
* [[FAO-PWY]]
+
−
* [[PWY66-391]]
+
−
* [[PWY-5136]]
+
−
* [[PWY-7726]]
+
−
* [[PWY-7007]]
+
−
* [[PWY-7337]]
+
−
* [[PWY-7288]]
+
−
* [[PWY-6837]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=6205624}}
+
* LIGAND-RXN:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00702 R00702]
−
{{#set: right end position=6216159}}
+
* UNIPROT:
−
{{#set: centisome position=92.661835    }}
+
** [http://www.uniprot.org/uniprot/O69445 O69445]
−
{{#set: common name=Esi_0005_0083|Esi0005_0083}}
+
** [http://www.uniprot.org/uniprot/P36596 P36596]
−
{{#set: reaction associated=ACYL-COA-OXIDASE-RXN|ACYLCOADEHYDROG-RXN|LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN|RXN-10696|RXN-10706|RXN-10707|RXN-11026|RXN-12518|RXN-12669|RXN-14264|RXN-14576|RXN-14771|RXN-14775|RXN-14785|RXN-14789|RXN-14796|RXN-16134|RXN-17113}}
+
** [http://www.uniprot.org/uniprot/O65688 O65688]
−
{{#set: pathway associated=PWY-6920|PWY-7340|PWY-7291|PWY-735|PWY-7606|PWY-7338|FAO-PWY|PWY66-391|PWY-5136|PWY-7726|PWY-7007|PWY-7337|PWY-7288|PWY-6837}}
+
** [http://www.uniprot.org/uniprot/O23118 O23118]
 +
** [http://www.uniprot.org/uniprot/O22107 O22107]
 +
** [http://www.uniprot.org/uniprot/Q40472 Q40472]
 +
** [http://www.uniprot.org/uniprot/O22106 O22106]
 +
** [http://www.uniprot.org/uniprot/P53800 P53800]
 +
** [http://www.uniprot.org/uniprot/P53799 P53799]
 +
** [http://www.uniprot.org/uniprot/P53798 P53798]
 +
** [http://www.uniprot.org/uniprot/P29704 P29704]
 +
** [http://www.uniprot.org/uniprot/Q04903 Q04903]
 +
** [http://www.uniprot.org/uniprot/Q42761 Q42761]
 +
** [http://www.uniprot.org/uniprot/Q42760 Q42760]
 +
** [http://www.uniprot.org/uniprot/P37268 P37268]
 +
** [http://www.uniprot.org/uniprot/Q02769 Q02769]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs}}
 +
{{#set: ec number=EC-2.5.1.103}}
 +
{{#set: gene associated=Ec-11_001030}}
 +
{{#set: in pathway=PWY-7072|PWY-6105|PWY-6767|PWY-5875}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 13:42, 21 March 2018

Reaction RXN-12263

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2 (2E,6E)-farnesyl diphosphate[c] => 1 diphosphate[c] + 1 presqualene diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7072, hopanoid biosynthesis (bacteria): PWY-7072
    • 1 reactions found over 14 reactions in the full pathway
  • PWY-6105, botryococcenes and methylated squalene biosynthesis: PWY-6105
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-6767, 4,4'-diapolycopenedioate biosynthesis: PWY-6767
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-5875, staphyloxanthin biosynthesis: PWY-5875
    • 1 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=DISULISOM-RXN&oldid=20852"