Difference between revisions of "RXN-1744"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] == * direction: ** LEFT-TO-RIGHT * common name: ** Phytoene synthase; chlo...")
(Created page with "Category:Gene == Gene Ec-20_001030 == * left end position: ** 1005929 * transcription direction: ** POSITIVE * right end position: ** 1007964 * centisome position: ** 19.5...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNARA-8002 RXNARA-8002] ==
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== Gene Ec-20_001030 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 1005929
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* common name:
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* transcription direction:
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** Phytoene synthase; chloroplast precursor
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** POSITIVE
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* right end position:
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** 1007964
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* centisome position:
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** 19.508278   
 
* Synonym(s):
 
* Synonym(s):
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** prephytoene-diphosphate synthase
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** Esi_0195_0044
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** PSase
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** Esi0195_0044
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** geranylgeranyl-diphosphate geranylgeranyltransferase
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** NDA
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[NADH-DEHYDROG-A-RXN]]
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** 1 [[CPD-464]][c] '''=>''' 1 [[CPD-12321]][c] '''+''' 1 [[PPI]][c]
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* With common name(s):
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** 1 prephytoene diphosphate[c] '''=>''' 1 15-cis-phytoene[c] '''+''' 1 diphosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-04_002810]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-5942]], trans-lycopene biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5942 PWY-5942]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-6692]]
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* [[PWY-3781]]
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* [[PWY-5083]]
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* [[PWY0-1335]]
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* [[PWY0-1334]]
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* [[PWY-4302]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: left end position=1005929}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=1007964}}
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{{#set: common name=Phytoene synthase; chloroplast precursor}}
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{{#set: centisome position=19.508278    }}
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{{#set: common name=prephytoene-diphosphate synthase|PSase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
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{{#set: common name=Esi_0195_0044|Esi0195_0044|NDA}}
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{{#set: gene associated=Ec-04_002810}}
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{{#set: reaction associated=NADH-DEHYDROG-A-RXN}}
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{{#set: in pathway=PWY-6287|PWY-5942|PWY-6475}}
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{{#set: pathway associated=PWY-6692|PWY-3781|PWY-5083|PWY0-1335|PWY0-1334|PWY-4302}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 13:42, 21 March 2018

Gene Ec-20_001030

  • left end position:
    • 1005929
  • transcription direction:
    • POSITIVE
  • right end position:
    • 1007964
  • centisome position:
    • 19.508278
  • Synonym(s):
    • Esi_0195_0044
    • Esi0195_0044
    • NDA

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-1744&oldid=20898"