Difference between revisions of "3.1.1.23-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.23.34-RXN 3.4.23.34-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** cathepsine B * ec n...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FARNESYLTRANSTRANSFERASE-RXN FARNESYLTRANSTRANSFERASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.23.34-RXN 3.4.23.34-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FARNESYLTRANSTRANSFERASE-RXN FARNESYLTRANSTRANSFERASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** cathepsine B
+
** Geranylgeranyl pyrophosphate synthetase, chloroplast precursor;
 +
** geranylgeranyl pyrophosphate synthase, chloroplast precursor
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.4.23.34 EC-3.4.23.34]
+
** [http://enzyme.expasy.org/EC/2.5.1.29 EC-2.5.1.29]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[General-Protein-Substrates]][c] '''=>''' 1 [[Peptides-holder]][c]
+
** 1 [[FARNESYL-PP]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[GERANYLGERANYL-PP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 a protein[c] '''=>''' 1 a peptide[c]
+
** 1 (2E,6E)-farnesyl diphosphate[c] '''+''' 1 isopentenyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 geranylgeranyl diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-06_006050]]
+
* Gene: [[Ec-16_004320]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-16_004330]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7492]], paspaline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7492 PWY-7492]
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6659]], fusicoccin A biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6659 PWY-6659]
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6691]], plaunotol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6691 PWY-6691]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5120]], geranylgeranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5120 PWY-5120]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7720]], ophiobolin F biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7720 PWY-7720]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7721]], methyl phomopsenoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7721 PWY-7721]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7517]], brassicicene C biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7517 PWY-7517]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17653 17653]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02061 R02061]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P14091 P14091]
+
** [http://www.uniprot.org/uniprot/P39464 P39464]
−
** [http://www.uniprot.org/uniprot/P16228 P16228]
+
** [http://www.uniprot.org/uniprot/P24322 P24322]
−
** [http://www.uniprot.org/uniprot/P25796 P25796]
+
** [http://www.uniprot.org/uniprot/P80042 P80042]
−
** [http://www.uniprot.org/uniprot/P43159 P43159]
+
** [http://www.uniprot.org/uniprot/Q12051 Q12051]
 +
** [http://www.uniprot.org/uniprot/P95999 P95999]
 +
** [http://www.uniprot.org/uniprot/P48368 P48368]
 +
** [http://www.uniprot.org/uniprot/P93227 P93227]
 +
** [http://www.uniprot.org/uniprot/P93228 P93228]
 +
** [http://www.uniprot.org/uniprot/Q42698 Q42698]
 +
** [http://www.uniprot.org/uniprot/Q43133 Q43133]
 +
** [http://www.uniprot.org/uniprot/Q42866 Q42866]
 +
** [http://www.uniprot.org/uniprot/P54976 P54976]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=cathepsine B}}
+
{{#set: common name=Geranylgeranyl pyrophosphate synthetase, chloroplast precursor;}}
−
{{#set: ec number=EC-3.4.23.34}}
+
{{#set: common name=geranylgeranyl pyrophosphate synthase, chloroplast precursor}}
−
{{#set: gene associated=Ec-06_006050}}
+
{{#set: ec number=EC-2.5.1.29}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=Ec-16_004320|Ec-16_004330}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: in pathway=PWY-7736|PWY-7492|PWY-6659|PWY-6691|PWY-5120|PWY-7720|PWY-7721|PWY-7517}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 13:42, 21 March 2018

Reaction FARNESYLTRANSTRANSFERASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Geranylgeranyl pyrophosphate synthetase, chloroplast precursor;
    • geranylgeranyl pyrophosphate synthase, chloroplast precursor
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7736, stellatic acid biosynthesis: PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-7492, paspaline biosynthesis: PWY-7492
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6659, fusicoccin A biosynthesis: PWY-6659
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-6691, plaunotol biosynthesis: PWY-6691
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5120, geranylgeranyl diphosphate biosynthesis: PWY-5120
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7720, ophiobolin F biosynthesis: PWY-7720
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7721, methyl phomopsenoate biosynthesis: PWY-7721
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7517, brassicicene C biosynthesis: PWY-7517
    • 1 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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