Difference between revisions of "THYMIDINE-TRIPHOSPHATASE-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SULFITE-REDUCTASE-FERREDOXIN-RXN SULFITE-REDUCTASE-FERREDOXIN-RXN] == * direction: ** LEFT-TO-RIGHT...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OXALODECARB-RXN OXALODECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** malate dehydrog...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SULFITE-REDUCTASE-FERREDOXIN-RXN SULFITE-REDUCTASE-FERREDOXIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OXALODECARB-RXN OXALODECARB-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Sulfite reductase
+
** malate dehydrogenase (decarboxylating) (NAD+)
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.8.7.1 EC-1.8.7.1]
+
** [http://enzyme.expasy.org/EC/1.1.1.38 EC-1.1.1.38]
 +
** [http://enzyme.expasy.org/EC/4.1.1.3 EC-4.1.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 8 [[PROTON]][c] '''+''' 1 [[SO3]][c] '''+''' 6 [[Reduced-ferredoxins]][c] '''=>''' 1 [[HS]][c] '''+''' 6 [[Oxidized-ferredoxins]][c] '''+''' 3 [[WATER]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PYRUVATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 8 H+[c] '''+''' 1 sulfite[c] '''+''' 6 a reduced ferredoxin [iron-sulfur] cluster[c] '''=>''' 1 hydrogen sulfide[c] '''+''' 6 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 3 H2O[c]
+
** 1 H+[c] '''+''' 1 oxaloacetate[c] '''=>''' 1 CO2[c] '''+''' 1 pyruvate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-02_004340]]
+
* Gene: [[Ec-07_002070]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: GO-TERM
−
** [[pantograph]]-[[aragem]]
+
* Gene: [[Ec-01_003680]]
−
* [[Ec-02_004330]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** ESILICULOSUS_GENOME
+
*** Assignment: GO-TERM
−
***EC-NUMBER
+
* Gene: [[Ec-07_002060]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 
== Pathways  ==
 
== Pathways  ==
−
* [[SULFMETII-PWY]], sulfate reduction II (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=SULFMETII-PWY SULFMETII-PWY]
+
* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation: [http://metacyc.org/META/NEW-IMAGE?object=METHYLGALLATE-DEGRADATION-PWY METHYLGALLATE-DEGRADATION-PWY]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6339]], syringate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6339 PWY-6339]
 +
** '''1''' reactions found over '''11''' reactions in the full pathway
 +
* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway): [http://metacyc.org/META/NEW-IMAGE?object=P184-PWY P184-PWY]
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-aragem]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15641 15641]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00859 R00859]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O82802 O82802]
+
** [http://www.uniprot.org/uniprot/P13187 P13187]
−
** [http://www.uniprot.org/uniprot/Q42590 Q42590]
+
** [http://www.uniprot.org/uniprot/P13155 P13155]
−
** [http://www.uniprot.org/uniprot/P72854 P72854]
+
** [http://www.uniprot.org/uniprot/P13156 P13156]
−
** [http://www.uniprot.org/uniprot/O23813 O23813]
+
** [http://www.uniprot.org/uniprot/Q58628 Q58628]
−
** [http://www.uniprot.org/uniprot/Q9LZ66 Q9LZ66]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Sulfite reductase}}
+
{{#set: common name=malate dehydrogenase (decarboxylating) (NAD+)}}
−
{{#set: ec number=EC-1.8.7.1}}
+
{{#set: ec number=EC-1.1.1.38}}
−
{{#set: gene associated=Ec-02_004340|Ec-02_004330}}
+
{{#set: ec number=EC-4.1.1.3}}
−
{{#set: in pathway=SULFMETII-PWY}}
+
{{#set: gene associated=Ec-07_002070|Ec-01_003680|Ec-07_002060}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: in pathway=METHYLGALLATE-DEGRADATION-PWY|PWY-6339|P184-PWY}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:43, 21 March 2018

Reaction OXALODECARB-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • malate dehydrogenase (decarboxylating) (NAD+)
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=THYMIDINE-TRIPHOSPHATASE-RXN&oldid=21028"