Difference between revisions of "RXN-9518"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15200 RXN-15200] == * direction: ** REVERSIBLE * common name: ** phenylpyruvate aminotransferas...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=INORGPYROPHOSPHAT-RXN INORGPYROPHOSPHAT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ino...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15200 RXN-15200] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=INORGPYROPHOSPHAT-RXN INORGPYROPHOSPHAT-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** phenylpyruvate aminotransferase
+
** inorganic diphosphatase
 +
** inorganic pyrophosphatase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.6.1 EC-2.6.1]
+
** [http://enzyme.expasy.org/EC/3.6.1.1 EC-3.6.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[TYR]][c] '''+''' 1 [[PHENYL-PYRUVATE]][c] '''<=>''' 1 [[PHE]][c] '''+''' 1 [[P-HYDROXY-PHENYLPYRUVATE]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[PPI]][c] '''=>''' 1 [[PROTON]][c] '''+''' 2 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-tyrosine[c] '''+''' 1 2-oxo-3-phenylpropanoate[c] '''<=>''' 1 L-phenylalanine[c] '''+''' 1 4-hydroxyphenylpyruvate[c]
+
** 1 H2O[c] '''+''' 1 diphosphate[c] '''=>''' 1 H+[c] '''+''' 2 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-01_004120]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-04_003260]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-01_011640]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-28_000170]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-26_005670]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-14_005330]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-10_002590]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-02_000870]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-18_000740]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-12_002140]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-24_002020]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7432]], L-phenylalanine biosynthesis III (cytosolic, plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7432 PWY-7432]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[gap-filling]]
+
* Category: [[orthology]]
−
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
** Source: [[orthology-aragem]]
−
*** Tool: [[meneco]]
+
*** Tool: [[pantograph]]
−
**** Comment: [[added for gapfilling]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
* RHEA:
−
{{#set: common name=phenylpyruvate aminotransferase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24576 24576]
−
{{#set: ec number=EC-2.6.1}}
+
* LIGAND-RXN:
−
{{#set: in pathway=PWY-7432}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00004 R00004]
−
{{#set: reconstruction category=gap-filling}}
+
* UNIPROT:
−
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
+
** [http://www.uniprot.org/uniprot/P21616 P21616]
−
{{#set: reconstruction tool=meneco}}
+
** [http://www.uniprot.org/uniprot/P31414 P31414]
−
{{#set: reconstruction comment=added for gapfilling}}
+
** [http://www.uniprot.org/uniprot/P28239 P28239]
 +
** [http://www.uniprot.org/uniprot/P37980 P37980]
 +
** [http://www.uniprot.org/uniprot/P84491 P84491]
 +
** [http://www.uniprot.org/uniprot/O59570 O59570]
 +
** [http://www.uniprot.org/uniprot/Q9S941 Q9S941]
 +
** [http://www.uniprot.org/uniprot/Q9S939 Q9S939]
 +
** [http://www.uniprot.org/uniprot/Q9S936 Q9S936]
 +
** [http://www.uniprot.org/uniprot/O26363 O26363]
 +
** [http://www.uniprot.org/uniprot/Q9S940 Q9S940]
 +
** [http://www.uniprot.org/uniprot/Q9S938 Q9S938]
 +
** [http://www.uniprot.org/uniprot/Q9S937 Q9S937]
 +
** [http://www.uniprot.org/uniprot/Q9PHM9 Q9PHM9]
 +
** [http://www.uniprot.org/uniprot/Q9UY24 Q9UY24]
 +
** [http://www.uniprot.org/uniprot/Q9JVG3 Q9JVG3]
 +
** [http://www.uniprot.org/uniprot/P47593 P47593]
 +
** [http://www.uniprot.org/uniprot/Q974Y8 Q974Y8]
 +
** [http://www.uniprot.org/uniprot/O05724 O05724]
 +
** [http://www.uniprot.org/uniprot/P19514 P19514]
 +
** [http://www.uniprot.org/uniprot/P00817 P00817]
 +
** [http://www.uniprot.org/uniprot/P0A7A9 P0A7A9]
 +
** [http://www.uniprot.org/uniprot/P13998 P13998]
 +
** [http://www.uniprot.org/uniprot/P19117 P19117]
 +
** [http://www.uniprot.org/uniprot/P21216 P21216]
 +
** [http://www.uniprot.org/uniprot/Q9R5T3 Q9R5T3]
 +
** [http://www.uniprot.org/uniprot/P37981 P37981]
 +
** [http://www.uniprot.org/uniprot/Q43801 Q43801]
 +
** [http://www.uniprot.org/uniprot/Q43798 Q43798]
 +
** [http://www.uniprot.org/uniprot/Q43797 Q43797]
 +
** [http://www.uniprot.org/uniprot/P50308 P50308]
 +
** [http://www.uniprot.org/uniprot/Q43796 Q43796]
 +
** [http://www.uniprot.org/uniprot/P93409 P93409]
 +
** [http://www.uniprot.org/uniprot/Q8H616 Q8H616]
 +
** [http://www.uniprot.org/uniprot/P93410 P93410]
 +
** [http://www.uniprot.org/uniprot/P75250 P75250]
 +
** [http://www.uniprot.org/uniprot/Q49071 Q49071]
 +
** [http://www.uniprot.org/uniprot/O48556 O48556]
 +
** [http://www.uniprot.org/uniprot/O22537 O22537]
 +
** [http://www.uniprot.org/uniprot/O82793 O82793]
 +
** [http://www.uniprot.org/uniprot/O23979 O23979]
 +
** [http://www.uniprot.org/uniprot/O49949 O49949]
 +
** [http://www.uniprot.org/uniprot/Q43187 Q43187]
 +
** [http://www.uniprot.org/uniprot/O22124 O22124]
 +
** [http://www.uniprot.org/uniprot/Q42650 Q42650]
 +
** [http://www.uniprot.org/uniprot/Q42651 Q42651]
 +
** [http://www.uniprot.org/uniprot/O65151 O65151]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=inorganic diphosphatase}}
 +
{{#set: common name=inorganic pyrophosphatase}}
 +
{{#set: ec number=EC-3.6.1.1}}
 +
{{#set: gene associated=Ec-01_004120|Ec-04_003260|Ec-01_011640|Ec-28_000170|Ec-26_005670|Ec-14_005330|Ec-10_002590|Ec-02_000870|Ec-18_000740|Ec-12_002140|Ec-24_002020}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 13:45, 21 March 2018

Reaction INORGPYROPHOSPHAT-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • inorganic diphosphatase
    • inorganic pyrophosphatase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 diphosphate[c] => 1 H+[c] + 2 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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