Difference between revisions of "RXN-13158"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12303 CPD-12303] == * smiles: ** CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRUFLAVREDUCT-RXN PYRUFLAVREDUCT-RXN] == * direction: ** REVERSIBLE * common name: ** Transketolas...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12303 CPD-12303] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRUFLAVREDUCT-RXN PYRUFLAVREDUCT-RXN] ==
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* smiles:
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* direction:
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** CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)OC1(C(NC(=O)C)C(OC(C)C(=O)NC(C)C(=O)NC(C(=O)[O-])CCC(=O)NC(CCCC[N+])C(NC(C)C(=O)[O-])=O)C(O)C(CO)O1))([O-])=O)C)C)C)C)C)C)C
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** REVERSIBLE
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* inchi key:
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** InChIKey=KCROFJGXXSCHGA-YGMFIXCYSA-K
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* common name:
 
* common name:
−
** undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
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** Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II
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* molecular weight:
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* ec number:
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** 1598.955   
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** [http://enzyme.expasy.org/EC/1.2.7.1 EC-1.2.7.1]
 
* Synonym(s):
 
* Synonym(s):
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** mur2Ac(oyl-L-Ala-γ-D-Glu-L-Lys-D-Ala)-diphosphoundecaprenol
 
−
** lipid I (tetrapeptide)
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[RXN-11347]]
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** 1 [[CO-A]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ACETYL-COA]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
 +
** 1 coenzyme A[c] '''+''' 1 pyruvate[c] '''+''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''<=>''' 1 CO2[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 1 H+[c] '''+''' 1 acetyl-CoA[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-18_003420]]
 +
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-15_004230]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-23_002710]]
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** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways  ==
 +
* [[PWY-6876]], isopropanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6876 PWY-6876]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6588]], pyruvate fermentation to acetone: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6588 PWY-6588]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=NPGLUCAT-PWY NPGLUCAT-PWY]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[CENTFERM-PWY]], pyruvate fermentation to butanoate: [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
 +
** '''6''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5483]], pyruvate fermentation to acetate III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5483 PWY-5483]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6583]], pyruvate fermentation to butanol I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6583 PWY-6583]
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5493]], reductive monocarboxylic acid cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5493 PWY-5493]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5600]], pyruvate fermentation to acetate VII: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5600 PWY-5600]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6587]], pyruvate fermentation to ethanol III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6587 PWY-6587]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
 +
** '''8''' reactions found over '''24''' reactions in the full pathway
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* [[GLUDEG-II-PWY]], L-glutamate degradation VII (to butanoate): [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-II-PWY GLUDEG-II-PWY]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
 +
** '''10''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-5538]], pyruvate fermentation to acetate VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5538 PWY-5538]
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** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[P142-PWY]], pyruvate fermentation to acetate I: [http://metacyc.org/META/NEW-IMAGE?object=P142-PWY P142-PWY]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
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** '''7''' reactions found over '''11''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=90657616 90657616]
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** [http://www.genome.jp/dbget-bin/www_bget?R01196 R01196]
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{{#set: smiles=CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)OC1(C(NC(=O)C)C(OC(C)C(=O)NC(C)C(=O)NC(C(=O)[O-])CCC(=O)NC(CCCC[N+])C(NC(C)C(=O)[O-])=O)C(O)C(CO)O1))([O-])=O)C)C)C)C)C)C)C}}
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* UNIPROT:
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{{#set: inchi key=InChIKey=KCROFJGXXSCHGA-YGMFIXCYSA-K}}
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** [http://www.uniprot.org/uniprot/Q57957 Q57957]
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{{#set: common name=undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-&gamma;-D-glutamyl-L-lysyl- D-alanine}}
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** [http://www.uniprot.org/uniprot/O28574 O28574]
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{{#set: molecular weight=1598.955    }}
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** [http://www.uniprot.org/uniprot/Q56316 Q56316]
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{{#set: common name=mur2Ac(oyl-L-Ala-&gamma;-D-Glu-L-Lys-D-Ala)-diphosphoundecaprenol|lipid I (tetrapeptide)}}
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** [http://www.uniprot.org/uniprot/Q9R503 Q9R503]
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{{#set: produced by=RXN-11347}}
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** [http://www.uniprot.org/uniprot/Q57714 Q57714]
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** [http://www.uniprot.org/uniprot/O05651 O05651]
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** [http://www.uniprot.org/uniprot/Q57715 Q57715]
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** [http://www.uniprot.org/uniprot/O27771 O27771]
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** [http://www.uniprot.org/uniprot/O28572 O28572]
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** [http://www.uniprot.org/uniprot/Q56317 Q56317]
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** [http://www.uniprot.org/uniprot/Q9UWL2 Q9UWL2]
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** [http://www.uniprot.org/uniprot/P56810 P56810]
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** [http://www.uniprot.org/uniprot/O28571 O28571]
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** [http://www.uniprot.org/uniprot/Q9UWL1 Q9UWL1]
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** [http://www.uniprot.org/uniprot/Q57717 Q57717]
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** [http://www.uniprot.org/uniprot/O25312 O25312]
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** [http://www.uniprot.org/uniprot/O25738 O25738]
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** [http://www.uniprot.org/uniprot/O25739 O25739]
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** [http://www.uniprot.org/uniprot/O58411 O58411]
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** [http://www.uniprot.org/uniprot/Q9UYZ4 Q9UYZ4]
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** [http://www.uniprot.org/uniprot/Q9UYZ3 Q9UYZ3]
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** [http://www.uniprot.org/uniprot/Q59455 Q59455]
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** [http://www.uniprot.org/uniprot/Q59456 Q59456]
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** [http://www.uniprot.org/uniprot/P80521 P80521]
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** [http://www.uniprot.org/uniprot/P80522 P80522]
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** [http://www.uniprot.org/uniprot/P80523 P80523]
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** [http://www.uniprot.org/uniprot/P80524 P80524]
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** [http://www.uniprot.org/uniprot/P95903 P95903]
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** [http://www.uniprot.org/uniprot/P95904 P95904]
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** [http://www.uniprot.org/uniprot/Q51799 Q51799]
 +
** [http://www.uniprot.org/uniprot/Q51800 Q51800]
 +
** [http://www.uniprot.org/uniprot/Q51802 Q51802]
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** [http://www.uniprot.org/uniprot/Q51803 Q51803]
 +
** [http://www.uniprot.org/uniprot/Q51804 Q51804]
 +
** [http://www.uniprot.org/uniprot/Q51805 Q51805]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II}}
 +
{{#set: ec number=EC-1.2.7.1}}
 +
{{#set: gene associated=Ec-18_003420|Ec-15_004230|Ec-23_002710}}
 +
{{#set: in pathway=PWY-6876|P23-PWY|P42-PWY|PWY-6588|NPGLUCAT-PWY|CENTFERM-PWY|PWY-5392|PWY-5483|PWY-6583|PWY-5493|PWY-5600|PWY-6587|PWY-5497|GLUDEG-II-PWY|PWY-6142|PWY-5538|P142-PWY|PWY-6863}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:45, 21 March 2018

Reaction PYRUFLAVREDUCT-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6876, isopropanol biosynthesis (engineered): PWY-6876
    • 2 reactions found over 5 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 10 reactions found over 12 reactions in the full pathway
  • P42-PWY, incomplete reductive TCA cycle: P42-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-6588, pyruvate fermentation to acetone: PWY-6588
    • 2 reactions found over 5 reactions in the full pathway
  • NPGLUCAT-PWY, Entner-Doudoroff pathway II (non-phosphorylative): NPGLUCAT-PWY
    • 4 reactions found over 9 reactions in the full pathway
  • CENTFERM-PWY, pyruvate fermentation to butanoate: CENTFERM-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II: PWY-5392
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-5483, pyruvate fermentation to acetate III: PWY-5483
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-6583, pyruvate fermentation to butanol I: PWY-6583
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-5493, reductive monocarboxylic acid cycle: PWY-5493
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5600, pyruvate fermentation to acetate VII: PWY-5600
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6587, pyruvate fermentation to ethanol III: PWY-6587
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic): PWY-5497
    • 8 reactions found over 24 reactions in the full pathway
  • GLUDEG-II-PWY, L-glutamate degradation VII (to butanoate): GLUDEG-II-PWY
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-5538, pyruvate fermentation to acetate VI: PWY-5538
    • 2 reactions found over 4 reactions in the full pathway
  • P142-PWY, pyruvate fermentation to acetate I: P142-PWY
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6863, pyruvate fermentation to hexanol (engineered): PWY-6863
    • 7 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-13158&oldid=21316"