Difference between revisions of "4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN] == * direction: ** LEFT-...")
(Created page with "Category:Gene == Gene Ec-24_004220 == * left end position: ** 4713959 * transcription direction: ** POSITIVE * right end position: ** 4720430 * centisome position: ** 94.5...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN] ==
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== Gene Ec-24_004220 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 4713959
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* common name:
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* transcription direction:
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** GHMP kinase, C-terminal domain
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/4.1.1.33 EC-4.1.1.33]
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** 4720430
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* centisome position:
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** 94.512215   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0109_0004
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** Esi0109_0004
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[PROTEIN-KINASE-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[CPD-641]][c] '''=>''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[ADP]][c]
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* With common name(s):
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** 1 ATP[c] '''+''' 1 (R)-mevalonate diphosphate[c] '''=>''' 1 isopentenyl diphosphate[c] '''+''' 1 phosphate[c] '''+''' 1 CO2[c] '''+''' 1 ADP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-21_001440]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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** [[pantograph]]-[[aragem]]
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== Pathways  ==
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* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
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** '''7''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=4713959}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23732 23732]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=4720430}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01121 R01121]
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{{#set: centisome position=94.512215    }}
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* UNIPROT:
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{{#set: common name=Esi_0109_0004|Esi0109_0004}}
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** [http://www.uniprot.org/uniprot/P32377 P32377]
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{{#set: reaction associated=PROTEIN-KINASE-RXN}}
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** [http://www.uniprot.org/uniprot/Q9U2A1 Q9U2A1]
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** [http://www.uniprot.org/uniprot/Q9U294 Q9U294]
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** [http://www.uniprot.org/uniprot/O13963 O13963]
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** [http://www.uniprot.org/uniprot/Q9M381 Q9M381]
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** [http://www.uniprot.org/uniprot/O23722 O23722]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=GHMP kinase, C-terminal domain}}
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{{#set: ec number=EC-4.1.1.33}}
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{{#set: gene associated=Ec-21_001440}}
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{{#set: in pathway=PWY-922|PWY-7391}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 13:48, 21 March 2018

Gene Ec-24_004220

  • left end position:
    • 4713959
  • transcription direction:
    • POSITIVE
  • right end position:
    • 4720430
  • centisome position:
    • 94.512215
  • Synonym(s):
    • Esi_0109_0004
    • Esi0109_0004

Reactions associated

Pathways associated

External links

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