Difference between revisions of "Ec-20 003150"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-882 RXN0-882] == * direction: ** LEFT-TO-RIGHT * common name: ** 1-hydroxy-2-methyl-2-(E)-bute...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=VALINE--TRNA-LIGASE-RXN VALINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-882 RXN0-882] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=VALINE--TRNA-LIGASE-RXN VALINE--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, chloroplast precursor
+
** Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding
 +
** Valine--tRNA ligase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.17.7.1 EC-1.17.7.1]
+
** [http://enzyme.expasy.org/EC/6.1.1.9 EC-6.1.1.9]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[HYDROXY-METHYL-BUTENYL-DIP]][c] '''+''' 1 [[WATER]][c] '''+''' 2 [[Oxidized-ferredoxins]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[VAL-tRNAs]][c] '''+''' 1 [[VAL]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Charged-VAL-tRNAs]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 2-C-methyl-D-erythritol-2,4-cyclodiphosphate[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''=>''' 1 (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate[c] '''+''' 1 H2O[c] '''+''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c]
+
** 1 H+[c] '''+''' 1 a tRNAval[c] '''+''' 1 L-valine[c] '''+''' 1 ATP[c] '''=>''' 1 an L-valyl-[tRNAval][c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-03_003610]]
+
* Gene: [[Ec-08_004480]]
−
** ESILICULOSUS_GENOME
+
** Source: [[annotation-esiliculosus_genome]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-12_005070]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
+
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10704 10704]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R08689 R08689]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03665 R03665]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P28350 P28350]
 +
** [http://www.uniprot.org/uniprot/P36420 P36420]
 +
** [http://www.uniprot.org/uniprot/P56000 P56000]
 +
** [http://www.uniprot.org/uniprot/O51680 O51680]
 +
** [http://www.uniprot.org/uniprot/O67411 O67411]
 +
** [http://www.uniprot.org/uniprot/O83998 O83998]
 +
** [http://www.uniprot.org/uniprot/Q9ZCN6 Q9ZCN6]
 +
** [http://www.uniprot.org/uniprot/Q9Z987 Q9Z987]
 +
** [http://www.uniprot.org/uniprot/Q9X2D7 Q9X2D7]
 +
** [http://www.uniprot.org/uniprot/Q9ZK61 Q9ZK61]
 +
** [http://www.uniprot.org/uniprot/Q9CDP6 Q9CDP6]
 +
** [http://www.uniprot.org/uniprot/Q58413 Q58413]
 +
** [http://www.uniprot.org/uniprot/P43834 P43834]
 +
** [http://www.uniprot.org/uniprot/Q9PPE4 Q9PPE4]
 +
** [http://www.uniprot.org/uniprot/O84304 O84304]
 +
** [http://www.uniprot.org/uniprot/P47576 P47576]
 +
** [http://www.uniprot.org/uniprot/Q94678 Q94678]
 +
** [http://www.uniprot.org/uniprot/Q04462 Q04462]
 +
** [http://www.uniprot.org/uniprot/P26640 P26640]
 +
** [http://www.uniprot.org/uniprot/Q05873 Q05873]
 +
** [http://www.uniprot.org/uniprot/Q26177 Q26177]
 +
** [http://www.uniprot.org/uniprot/P75304 P75304]
 +
** [http://www.uniprot.org/uniprot/Q49021 Q49021]
 +
** [http://www.uniprot.org/uniprot/P11931 P11931]
 +
** [http://www.uniprot.org/uniprot/P07806 P07806]
 +
** [http://www.uniprot.org/uniprot/P07118 P07118]
 +
** [http://www.uniprot.org/uniprot/O77443 O77443]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, chloroplast precursor}}
+
{{#set: common name=Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding}}
−
{{#set: ec number=EC-1.17.7.1}}
+
{{#set: common name=Valine--tRNA ligase}}
−
{{#set: gene associated=Ec-03_003610}}
+
{{#set: ec number=EC-6.1.1.9}}
−
{{#set: in pathway=PWY-7560}}
+
{{#set: gene associated=Ec-08_004480|Ec-12_005070}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:49, 21 March 2018

Reaction VALINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding
    • Valine--tRNA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 a tRNAval[c] + 1 L-valine[c] + 1 ATP[c] => 1 an L-valyl-[tRNAval][c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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