Difference between revisions of "RXN-12565"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETYL-COA-ACETYLTRANSFER-RXN ACETYL-COA-ACETYLTRANSFER-RXN] == * direction: ** REVERSIBLE * common...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5180 RXN0-5180] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/2.5...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETYL-COA-ACETYLTRANSFER-RXN ACETYL-COA-ACETYLTRANSFER-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5180 RXN0-5180] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
 
−
** Thiolase, C-terminal
 
−
** Acetyl-CoA acetyltransferase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.9 EC-2.3.1.9]
+
** [http://enzyme.expasy.org/EC/2.5.1 EC-2.5.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[ACETYL-COA]][c] '''<=>''' 1 [[CO-A]][c] '''+''' 1 [[ACETOACETYL-COA]][c]
+
** 1 [[FARNESYL-PP]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[CPD0-1028]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 acetyl-CoA[c] '''<=>''' 1 coenzyme A[c] '''+''' 1 acetoacetyl-CoA[c]
+
** 1 (2E,6E)-farnesyl diphosphate[c] '''+''' 1 isopentenyl diphosphate[c] '''<=>''' 1 2-cis,6-trans,10-trans-geranylgeranyl diphosphate[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-26_003940]]
+
* Gene: [[Ec-27_002140]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[orthology-aragem]]
−
* [[Ec-24_000870]]
+
* Gene: [[Ec-05_002690]]
−
** ESILICULOSUS_GENOME
+
** Source: [[orthology-aragem]]
−
***EC-NUMBER
+
* Gene: [[Ec-17_003520]]
−
* [[Ec-22_002850]]
+
** Source: [[orthology-aragem]]
−
** ESILICULOSUS_GENOME
+
* Gene: [[Ec-18_000990]]
−
***EC-NUMBER
+
** Source: [[orthology-aragem]]
−
** [[pantograph]]-[[aragem]]
+
* Gene: [[Ec-08_002270]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[orthology-aragem]]
−
** [[pantograph]]-[[aragem]]
+
* Gene: [[Ec-24_003910]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[orthology-aragem]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY]
 
−
** '''4''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-5177]], glutaryl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5177 PWY-5177]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6583]], pyruvate fermentation to butanol I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6583 PWY-6583]
 
−
** '''4''' reactions found over '''8''' reactions in the full pathway
 
−
* [[P163-PWY]], L-lysine fermentation to acetate and butanoate: [http://metacyc.org/META/NEW-IMAGE?object=P163-PWY P163-PWY]
 
−
** '''1''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6883]], pyruvate fermentation to butanol II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6883 PWY-6883]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5676]], acetyl-CoA fermentation to butanoate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5676 PWY-5676]
 
−
** '''1''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7778]], 2-methylpropene degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7778 PWY-7778]
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7779]], methyl tert-butyl ether degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7779 PWY-7779]
 
−
** '''2''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6588]], pyruvate fermentation to acetone: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6588 PWY-6588]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY1-3]], polyhydroxybutanoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1-3 PWY1-3]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789]
 
−
** '''6''' reactions found over '''16''' reactions in the full pathway
 
−
* [[PWY-6876]], isopropanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6876 PWY-6876]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[CENTFERM-PWY]], pyruvate fermentation to butanoate: [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY]
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5741]], ethylmalonyl-CoA pathway: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5741 PWY-5741]
 
−
** '''1''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[ACETOACETATE-DEG-PWY]], acetoacetate degradation (to acetyl CoA): [http://metacyc.org/META/NEW-IMAGE?object=ACETOACETATE-DEG-PWY ACETOACETATE-DEG-PWY]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY66-367]], ketogenesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-367 PWY66-367]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7216]], (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7216 PWY-7216]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY66-368]], ketolysis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-368 PWY66-368]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7401 PWY-7401]
 
−
** '''4''' reactions found over '''16''' reactions in the full pathway
 
−
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
 
−
** '''7''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
 
−
** '''4''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-aragem]]
 
** Source: [[orthology-aragem]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[annotation]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21036 21036]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31282 31282]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00238 R00238]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05555 R05555]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q8CAY6 Q8CAY6]
+
−
** [http://www.uniprot.org/uniprot/P41338 P41338]
+
−
** [http://www.uniprot.org/uniprot/P45362 P45362]
+
−
** [http://www.uniprot.org/uniprot/Q9BWD1 Q9BWD1]
+
−
** [http://www.uniprot.org/uniprot/P45359 P45359]
+
−
** [http://www.uniprot.org/uniprot/P24752 P24752]
+
−
** [http://www.uniprot.org/uniprot/Q12598 Q12598]
+
−
** [http://www.uniprot.org/uniprot/P45369 P45369]
+
−
** [http://www.uniprot.org/uniprot/P46707 P46707]
+
−
** [http://www.uniprot.org/uniprot/P73825 P73825]
+
−
** [http://www.uniprot.org/uniprot/Q43637 Q43637]
+
−
** [http://www.uniprot.org/uniprot/Q9UQW6 Q9UQW6]
+
−
** [http://www.uniprot.org/uniprot/Q9Z3Y4 Q9Z3Y4]
+
−
** [http://www.uniprot.org/uniprot/P77852 P77852]
+
−
** [http://www.uniprot.org/uniprot/Q9XD81 Q9XD81]
+
−
** [http://www.uniprot.org/uniprot/Q9ZGI9 Q9ZGI9]
+
−
** [http://www.uniprot.org/uniprot/Q9L8E0 Q9L8E0]
+
−
** [http://www.uniprot.org/uniprot/P14611 P14611]
+
−
** [http://www.uniprot.org/uniprot/P07097 P07097]
+
−
** [http://www.uniprot.org/uniprot/P17764 P17764]
+
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=Thiolase, C-terminal}}
+
{{#set: ec number=EC-2.5.1}}
−
{{#set: common name=Acetyl-CoA acetyltransferase}}
+
{{#set: gene associated=Ec-27_002140|Ec-05_002690|Ec-17_003520|Ec-18_000990|Ec-08_002270|Ec-24_003910}}
−
{{#set: ec number=EC-2.3.1.9}}
+
{{#set: in pathway=}}
−
{{#set: gene associated=Ec-26_003940|Ec-24_000870|Ec-22_002850}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: in pathway=P162-PWY|PWY-5177|PWY-6583|P163-PWY|PWY-6883|PWY-5676|PWY-7778|PWY-7779|PWY-6588|PWY1-3|PWY-5789|PWY-6876|CENTFERM-PWY|PWY-7391|PWY-5741|PWY-6174|ACETOACETATE-DEG-PWY|PWY66-367|PWY-7216|PWY-922|PWY66-368|PWY-7401|PWY-6863|PWY-7524}}
+
{{#set: reconstruction source=orthology-aragem}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 13:51, 21 March 2018

Reaction RXN0-5180

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (2E,6E)-farnesyl diphosphate[c] + 1 isopentenyl diphosphate[c] <=> 1 2-cis,6-trans,10-trans-geranylgeranyl diphosphate[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-12565&oldid=22267"