Difference between revisions of "CPD-30"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.9-RXN 1.5.1.9-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Saccharopine dehydrogen...")
(Created page with "Category:Gene == Gene Ec-11_002460 == * left end position: ** 2587222 * transcription direction: ** POSITIVE * right end position: ** 2592123 * centisome position: ** 41.1...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.9-RXN 1.5.1.9-RXN] ==
+
== Gene Ec-11_002460 ==
−
* direction:
+
* left end position:
−
** LEFT-TO-RIGHT
+
** 2587222
−
* common name:
+
* transcription direction:
−
** Saccharopine dehydrogenase
+
** POSITIVE
−
* ec number:
+
* right end position:
−
** [http://enzyme.expasy.org/EC/1.5.1.9 EC-1.5.1.9]
+
** 2592123
 +
* centisome position:
 +
** 41.13454   
 
* Synonym(s):
 
* Synonym(s):
 +
** Esi_0308_0036
 +
** Esi0308_0036
 +
** THA2
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN]]
−
** 1 [[SACCHAROPINE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[ALLYSINE]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c]
+
** Source: [[orthology-aragem]]
−
* With common name(s):
+
* Reaction: [[RXN-14146]]
−
** 1 L-saccharopine[c] '''+''' 1 H2O[c] '''+''' 1 NAD+[c] '''=>''' 1 (S)-2-amino-6-oxohexanoate[c] '''+''' 1 L-glutamate[c] '''+''' 1 H+[c] '''+''' 1 NADH[c]
+
** Source: [[manual-2_cycrxns_to_add]]
−
 
+
* Reaction: [[RXN-9896]]
−
== Genes associated with this reaction  ==
+
** Source: [[orthology-aragem]]
−
Genes have been associated with this reaction based on different elements listed below.
+
* Reaction: [[THREONINE-ALDOLASE-RXN]]
−
* [[Ec-07_005660]]
+
−
** ESILICULOSUS_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
== Pathways  ==
+
−
* [[LYSINE-DEG1-PWY]], L-lysine degradation XI (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=LYSINE-DEG1-PWY LYSINE-DEG1-PWY]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[annotation]]
+
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: go-term
 +
== Pathways associated ==
 +
* [[3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]]
 +
* [[GLYSYN-THR-PWY]]
 +
* [[PWY-5436]]
 +
* [[PWY-6100]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: left end position=2587222}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24520 24520]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: right end position=2592123}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R02313 R02313]
+
{{#set: centisome position=41.13454    }}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: common name=Esi_0308_0036|Esi0308_0036|THA2}}
−
{{#set: common name=Saccharopine dehydrogenase}}
+
{{#set: reaction associated=4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN|RXN-14146|RXN-9896|THREONINE-ALDOLASE-RXN}}
−
{{#set: ec number=EC-1.5.1.9}}
+
{{#set: pathway associated=3-HYDROXYPHENYLACETATE-DEGRADATION-PWY|GLYSYN-THR-PWY|PWY-5436|PWY-6100}}
−
{{#set: gene associated=Ec-07_005660}}
+
−
{{#set: in pathway=LYSINE-DEG1-PWY}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Revision as of 13:52, 21 March 2018

Gene Ec-11_002460

  • left end position:
    • 2587222
  • transcription direction:
    • POSITIVE
  • right end position:
    • 2592123
  • centisome position:
    • 41.13454
  • Synonym(s):
    • Esi_0308_0036
    • Esi0308_0036
    • THA2

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=CPD-30&oldid=22311"