Difference between revisions of "CPD-30"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.9-RXN 1.5.1.9-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Saccharopine dehydrogen...")
(Created page with "Category:Gene == Gene Ec-11_002460 == * left end position: ** 2587222 * transcription direction: ** POSITIVE * right end position: ** 2592123 * centisome position: ** 41.1...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.9-RXN 1.5.1.9-RXN] ==
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== Gene Ec-11_002460 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 2587222
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* common name:
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* transcription direction:
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** Saccharopine dehydrogenase
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/1.5.1.9 EC-1.5.1.9]
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** 2592123
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* centisome position:
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** 41.13454   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0308_0036
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** Esi0308_0036
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** THA2
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN]]
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** 1 [[SACCHAROPINE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[ALLYSINE]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c]
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** Source: [[orthology-aragem]]
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* With common name(s):
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* Reaction: [[RXN-14146]]
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** 1 L-saccharopine[c] '''+''' 1 H2O[c] '''+''' 1 NAD+[c] '''=>''' 1 (S)-2-amino-6-oxohexanoate[c] '''+''' 1 L-glutamate[c] '''+''' 1 H+[c] '''+''' 1 NADH[c]
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** Source: [[manual-2_cycrxns_to_add]]
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* Reaction: [[RXN-9896]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-aragem]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[THREONINE-ALDOLASE-RXN]]
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* [[Ec-07_005660]]
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** ESILICULOSUS_GENOME
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[LYSINE-DEG1-PWY]], L-lysine degradation XI (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=LYSINE-DEG1-PWY LYSINE-DEG1-PWY]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
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* [[3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]]
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* [[GLYSYN-THR-PWY]]
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* [[PWY-5436]]
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* [[PWY-6100]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=2587222}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24520 24520]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=2592123}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02313 R02313]
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{{#set: centisome position=41.13454    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Esi_0308_0036|Esi0308_0036|THA2}}
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{{#set: common name=Saccharopine dehydrogenase}}
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{{#set: reaction associated=4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN|RXN-14146|RXN-9896|THREONINE-ALDOLASE-RXN}}
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{{#set: ec number=EC-1.5.1.9}}
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{{#set: pathway associated=3-HYDROXYPHENYLACETATE-DEGRADATION-PWY|GLYSYN-THR-PWY|PWY-5436|PWY-6100}}
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{{#set: gene associated=Ec-07_005660}}
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{{#set: in pathway=LYSINE-DEG1-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 14:52, 21 March 2018

Gene Ec-11_002460

  • left end position:
    • 2587222
  • transcription direction:
    • POSITIVE
  • right end position:
    • 2592123
  • centisome position:
    • 41.13454
  • Synonym(s):
    • Esi_0308_0036
    • Esi0308_0036
    • THA2

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=CPD-30&oldid=22311"