Difference between revisions of "Ec-05 000260"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACYL-COA-OXIDASE-RXN ACYL-COA-OXIDASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-...")
(Created page with "Category:Gene == Gene Ec-21_005150 == * left end position: ** 6061677 * transcription direction: ** NEGATIVE * right end position: ** 6062176 * centisome position: ** 82.1...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACYL-COA-OXIDASE-RXN ACYL-COA-OXIDASE-RXN] ==
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== Gene Ec-21_005150 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 6061677
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* common name:
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* transcription direction:
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** acyl-CoA oxidase, partial
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** NEGATIVE
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** acyl-CoA oxidase
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* right end position:
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** Acyl-CoA oxidase/dehydrogenase, central domain
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** 6062176
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/1.3.3.6 EC-1.3.3.6]
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** 82.135216   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0155_0019
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** Esi0155_0019
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-1501_METACYC18.5]]
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[ACYL-COA]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[TRANS-D2-ENOYL-COA]][c]
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** Source: [[manual-1_cycrxns_to_add]]
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* With common name(s):
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* Reaction: [[RXN-15065]]
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** 1 oxygen[c] '''+''' 1 an acyl-CoA[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 a trans-2-enoyl-CoA[c]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: go-term
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== Genes associated with this reaction  ==
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* Reaction: [[RXN-15067]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-esiliculosus_genome]]
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* [[Ec-08_006390]]
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*** Assignment: go-term
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** ESILICULOSUS_GENOME
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* Reaction: [[RXN-15068]]
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***AUTOMATED-NAME-MATCH
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** Source: [[annotation-esiliculosus_genome]]
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* [[Ec-26_004320]]
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*** Assignment: go-term
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** ESILICULOSUS_GENOME
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* Reaction: [[RXN-16138]]
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***EC-NUMBER
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** Source: [[annotation-esiliculosus_genome]]
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* [[Ec-22_002920]]
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*** Assignment: go-term
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** ESILICULOSUS_GENOME
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* Reaction: [[RXN-16139]]
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***EC-NUMBER
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** Source: [[annotation-esiliculosus_genome]]
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== Pathways  ==
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*** Assignment: go-term
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* [[PWY-7007]], methyl ketone biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7007 PWY-7007]
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* Reaction: [[RXN-17735]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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** Source: [[annotation-esiliculosus_genome]]
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== Reconstruction information  ==
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*** Assignment: go-term
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* Category: [[annotation]]
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* Reaction: [[RXN-17736]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: go-term
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* Reaction: [[RXN0-6725]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
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* [[PWY66-397]]
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* [[PWY-7409]]
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* [[PWY66-394]]
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* [[PWY66-395]]
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* [[PWY-7783]]
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* [[PWY-7417]]
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* [[PWY-7416]]
 
== External links  ==
 
== External links  ==
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* PIR:
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{{#set: left end position=6061677}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52121 T52121]
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{{#set: transcription direction=NEGATIVE}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52120 T52120]
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{{#set: right end position=6062176}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04418 T04418]
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{{#set: centisome position=82.135216    }}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S64224 S64224]
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{{#set: common name=Esi_0155_0019|Esi0155_0019}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40722 S40722]
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{{#set: reaction associated=RXN-1501_METACYC18.5|RXN-15065|RXN-15067|RXN-15068|RXN-16138|RXN-16139|RXN-17735|RXN-17736|RXN0-6725}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXRTA2 OXRTA2]
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{{#set: pathway associated=PWY66-397|PWY-7409|PWY66-394|PWY66-395|PWY-7783|PWY-7417|PWY-7416}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXRTA1 OXRTA1]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX5 OXCKX5]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX4 OXCKX4]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX OXCKX]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKPM OXCKPM]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKP2 OXCKP2]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKAX OXCKAX]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4563 JC4563]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I38095 I38095]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54942 B54942]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54942 A54942]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00388 R00388]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q15067 Q15067]
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** [http://www.uniprot.org/uniprot/Q00468 Q00468]
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** [http://www.uniprot.org/uniprot/P06598 P06598]
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** [http://www.uniprot.org/uniprot/P11356 P11356]
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** [http://www.uniprot.org/uniprot/P07872 P07872]
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** [http://www.uniprot.org/uniprot/P34355 P34355]
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** [http://www.uniprot.org/uniprot/P13711 P13711]
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** [http://www.uniprot.org/uniprot/O23977 O23977]
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** [http://www.uniprot.org/uniprot/O65201 O65201]
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** [http://www.uniprot.org/uniprot/O65202 O65202]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=acyl-CoA oxidase, partial}}
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{{#set: common name=acyl-CoA oxidase}}
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{{#set: common name=Acyl-CoA oxidase/dehydrogenase, central domain}}
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{{#set: ec number=EC-1.3.3.6}}
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{{#set: gene associated=Ec-08_006390|Ec-26_004320|Ec-22_002920}}
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{{#set: in pathway=PWY-7007}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 14:53, 21 March 2018

Gene Ec-21_005150

  • left end position:
    • 6061677
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 6062176
  • centisome position:
    • 82.135216
  • Synonym(s):
    • Esi_0155_0019
    • Esi0155_0019

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-05_000260&oldid=22457"