Difference between revisions of "Double-Stranded-DNAs"

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(Created page with "Category:Gene == Gene Ec-21_005710 == * left end position: ** 6625199 * transcription direction: ** NEGATIVE * right end position: ** 6634691 * centisome position: ** 89.7...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMP-DEAMINASE-RXN AMP-DEAMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Adenosine/A...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-21_005710 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMP-DEAMINASE-RXN AMP-DEAMINASE-RXN] ==
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* left end position:
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* direction:
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** 6625199
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** Adenosine/AMP deaminase domain
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* right end position:
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** AMP deaminase
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** 6634691
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/3.5.4.17 EC-3.5.4.17]
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** 89.7709   
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** [http://enzyme.expasy.org/EC/3.5.4.6 EC-3.5.4.6]
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0014_0076
 
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** Esi0014_0076
 
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** PGK
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[PHOSGLYPHOS-RXN]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[AMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[IMP]][c] '''+''' 1 [[AMMONIUM]][c]
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***ec-number
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* With common name(s):
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** [[pantograph]]-[[aragem]]
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** 1 AMP[c] '''+''' 1 H+[c] '''+''' 1 H2O[c] '''=>''' 1 IMP[c] '''+''' 1 ammonium[c]
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** [[pantograph]]-[[aragem]]
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== Pathways associated ==
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== Genes associated with this reaction  ==
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* [[PWY-1042]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[PWY-7003]]
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* Gene: [[Ec-04_006560]]
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* [[GLYCOLYSIS]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[SUCSYN-PWY]]
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*** Assignment: GO-TERM
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* [[PWY-6901]]
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* Gene: [[Ec-00_010560]]
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* [[P124-PWY]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[PWY-6886]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[CALVIN-PWY]]
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== Pathways  ==
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* [[ANAGLYCOLYSIS-PWY]]
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* [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596]
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* [[GLUCONEO-PWY]]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [[P122-PWY]]
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== Reconstruction information  ==
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* [[P185-PWY]]
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* Category: [[annotation]]
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* [[PWY-5484]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[PWY66-399]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=6625199}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14777 14777]
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{{#set: right end position=6634691}}
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* LIGAND-RXN:
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{{#set: centisome position=89.7709    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00181 R00181]
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{{#set: common name=Esi_0014_0076|Esi0014_0076|PGK}}
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* UNIPROT:
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{{#set: reaction associated=PHOSGLYPHOS-RXN}}
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** [http://www.uniprot.org/uniprot/P10759 P10759]
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{{#set: pathway associated=PWY-1042|PWY-7003|GLYCOLYSIS|SUCSYN-PWY|PWY-6901|P124-PWY|PWY-6886|CALVIN-PWY|ANAGLYCOLYSIS-PWY|GLUCONEO-PWY|P122-PWY|P185-PWY|PWY-5484|PWY66-399}}
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** [http://www.uniprot.org/uniprot/Q02356 Q02356]
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** [http://www.uniprot.org/uniprot/P23109 P23109]
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** [http://www.uniprot.org/uniprot/P15274 P15274]
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** [http://www.uniprot.org/uniprot/Q7M3H8 Q7M3H8]
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** [http://www.uniprot.org/uniprot/Q01433 Q01433]
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** [http://www.uniprot.org/uniprot/Q01432 Q01432]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Adenosine/AMP deaminase domain}}
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{{#set: common name=AMP deaminase}}
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{{#set: ec number=EC-3.5.4.17}}
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{{#set: ec number=EC-3.5.4.6}}
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{{#set: gene associated=Ec-04_006560|Ec-00_010560}}
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{{#set: in pathway=PWY-6596}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 13:54, 21 March 2018

Reaction AMP-DEAMINASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Adenosine/AMP deaminase domain
    • AMP deaminase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 AMP[c] + 1 H+[c] + 1 H2O[c] => 1 IMP[c] + 1 ammonium[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6596, adenosine nucleotides degradation I: PWY-6596
    • 6 reactions found over 8 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Double-Stranded-DNAs&oldid=22610"