Difference between revisions of "PWY-7115"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9527 RXN-9527] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-decanoyl-[acyl-carrier...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9527 RXN-9527] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
−
** 3-oxo-decanoyl-[acyl-carrier protein] synthase
+
** C4 photosynthetic carbon assimilation cycle, NAD-ME type
−
** Beta-ketoacyl synthase, N-terminal
+
−
** Thiolase-like, subgroup
+
−
** beta-ketoacyl synthase, partial
+
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** C4 photosynthesis, NAD-ME type
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''9''' reactions found over '''9''' reactions in the full pathway
−
** 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Octanoyl-ACPs]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[3-oxo-decanoyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* [[1.1.1.39-RXN]]
−
* With common name(s):
+
** 3 associated gene(s):
−
** 1 a malonyl-[acp][c] '''+''' 1 H+[c] '''+''' 1 an octanoyl-[acp][c] '''=>''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 a 3-oxo-decanoyl-[acp][c] '''+''' 1 CO2[c]
+
*** [[Ec-01_003680]]
−
 
+
*** [[Ec-07_002070]]
−
== Genes associated with this reaction  ==
+
*** [[Ec-07_002060]]
−
Genes have been associated with this reaction based on different elements listed below.
+
** 1 reconstruction source(s) associated:
−
* Gene: [[Ec-27_003480]]
+
*** [[annotation-esiliculosus_genome]]
−
** Source: [[annotation-esiliculosus_genome]]
+
* [[ALANINE-AMINOTRANSFERASE-RXN]]
−
*** Assignment: EC-NUMBER
+
** 1 associated gene(s):
−
* Gene: [[Ec-12_000650]]
+
*** [[Ec-01_011040]]
−
** Source: [[annotation-esiliculosus_genome]]
+
** 2 reconstruction source(s) associated:
−
*** Assignment: GO-TERM
+
*** [[annotation-esiliculosus_genome]]
−
** Source: [[orthology-aragem]]
+
*** [[orthology-aragem]]
−
** Source: [[orthology-aragem]]
+
* [[ASPAMINOTRANS-RXN]]
−
* Gene: [[Ec-12_000640]]
+
** 3 associated gene(s):
−
** Source: [[annotation-esiliculosus_genome]]
+
*** [[Ec-03_003270]]
−
*** Assignment: EC-NUMBER
+
*** [[Ec-01_007480]]
−
* Gene: [[Ec-27_002090]]
+
*** [[Ec-23_003500]]
−
** Source: [[annotation-esiliculosus_genome]]
+
** 2 reconstruction source(s) associated:
−
*** Assignment: EC-NUMBER
+
*** [[annotation-esiliculosus_genome]]
−
** Source: [[orthology-aragem]]
+
*** [[orthology-aragem]]
−
** Source: [[orthology-aragem]]
+
* [[MALATE-DEH-RXN]]
−
== Pathways  ==
+
** 2 associated gene(s):
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
+
*** [[Ec-10_006200]]
−
** '''28''' reactions found over '''31''' reactions in the full pathway
+
*** [[Ec-02_003100]]
−
== Reconstruction information  ==
+
** 2 reconstruction source(s) associated:
−
* Category: [[orthology]]
+
*** [[annotation-esiliculosus_genome]]
−
** Source: [[orthology-aragem]]
+
*** [[orthology-aragem]]
−
*** Tool: [[pantograph]]
+
* [[PEPCARBOX-RXN]]
−
* Category: [[annotation]]
+
** 1 associated gene(s):
−
** Source: [[annotation-esiliculosus_genome]]
+
*** [[Ec-28_003470]]
−
*** Tool: [[pathwaytools]]
+
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN]]
 +
** 1 associated gene(s):
 +
*** [[Ec-18_001310]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
*** [[orthology-aragem]]
 +
* [[RXN-13697]]
 +
** 3 associated gene(s):
 +
*** [[Ec-01_007480]]
 +
*** [[Ec-23_003500]]
 +
*** [[Ec-03_003270]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN-13698]]
 +
** 1 associated gene(s):
 +
*** [[Ec-01_011040]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
* [[RXN0-5224]]
 +
** 8 associated gene(s):
 +
*** [[Ec-03_001960]]
 +
*** [[Ec-10_002770]]
 +
*** [[Ec-06_004120]]
 +
*** [[Ec-05_001290]]
 +
*** [[Ec-27_005680]]
 +
*** [[Ec-07_004610]]
 +
*** [[Ec-22_001150]]
 +
*** [[Ec-16_004700]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: taxonomic range=TAX-33090}}
−
{{#set: common name=3-oxo-decanoyl-[acyl-carrier protein] synthase}}
+
{{#set: common name=C4 photosynthetic carbon assimilation cycle, NAD-ME type}}
−
{{#set: common name=Beta-ketoacyl synthase, N-terminal}}
+
{{#set: common name=C4 photosynthesis, NAD-ME type}}
−
{{#set: common name=Thiolase-like, subgroup}}
+
{{#set: reaction found=9}}
−
{{#set: common name=beta-ketoacyl synthase, partial}}
+
{{#set: total reaction=9}}
−
{{#set: common name=3-oxoacyl-[acyl-carrier-protein] synthase}}
+
{{#set: completion rate=100.0}}
−
{{#set: ec number=EC-2.3.1.41}}
+
−
{{#set: gene associated=Ec-27_003480|Ec-12_000650|Ec-12_000640|Ec-27_002090}}
+
−
{{#set: in pathway=PWY-5971}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:00, 21 March 2018

Pathway PWY-7115

  • taxonomic range:
  • common name:
    • C4 photosynthetic carbon assimilation cycle, NAD-ME type
  • Synonym(s):
    • C4 photosynthesis, NAD-ME type

Reaction(s) found

9 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-7115&oldid=23795"