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| − | [[Category:Reaction]] | + | [[Category:Pathway]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14897 RXN-14897] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7414 PWY-7414] == |
| − | * direction: | + | * taxonomic range: |
| − | ** LEFT-TO-RIGHT | + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1883 TAX-1883] |
| | * common name: | | * common name: |
| − | ** Pectin lyase fold | + | ** dTDP-α-D-mycaminose biosynthesis |
| − | * ec number:
| + | |
| − | ** [http://enzyme.expasy.org/EC/4.2.2.10 EC-4.2.2.10]
| + | |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reaction(s) found == |
| − | * With identifiers:
| + | '''1''' reactions found over '''5''' reactions in the full pathway |
| − | ** 1 [[Pectin]][c] '''=>''' 1 [[CPD-11241]][c]
| + | * [[DTDPGLUCDEHYDRAT-RXN]] |
| − | * With common name(s):
| + | ** 2 associated gene(s): |
| − | ** 1 a pectin[c] '''=>''' 1 4-(4-deoxy-α-D-galact-4-enuronosyl)-D-galacturonate[c]
| + | *** [[Ec-27_005770]] |
| − | | + | *** [[Ec-01_007350]] |
| − | == Genes associated with this reaction ==
| + | ** 2 reconstruction source(s) associated: |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | *** [[annotation-esiliculosus_genome]] |
| − | * Gene: [[Ec-08_000940]] | + | *** [[orthology-aragem]] |
| − | ** Source: [[annotation-esiliculosus_genome]] | + | == Reaction(s) not found == |
| − | *** Assignment: AUTOMATED-NAME-MATCH | + | * [http://metacyc.org/META/NEW-IMAGE?object=DTDPGLUCOSEPP-RXN DTDPGLUCOSEPP-RXN] |
| − | * Gene: [[Ec-04_001770]]
| + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-12772 RXN-12772] |
| − | ** Source: [[annotation-esiliculosus_genome]] | + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-12810 RXN-12810] |
| − | *** Assignment: AUTOMATED-NAME-MATCH | + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-12840 RXN-12840] |
| − | * Gene: [[Ec-08_000930]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]] | + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH | + | |
| − | * Gene: [[Ec-18_004360]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH | + | |
| − | * Gene: [[Ec-13_002310]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH | + | |
| − | * Gene: [[Ec-21_001490]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-14_000190]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]] | + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-12_000410]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]] | + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-00_009490]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]] | + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-21_003140]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-02_001170]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-08_000860]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-00_010800]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-13_002650]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-20_003100]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-02_001160]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-14_000350]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-00_006370]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-23_004040]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-25_001080]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-08_000920]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-13_002330]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-09_004260]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-09_004230]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-00_011490]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-14_004740]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-20_003120]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-21_001360]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | * Gene: [[Ec-13_002640]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | == Pathways ==
| + | |
| − | * [[PWY-7243]], pectin degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7243 PWY-7243]
| + | |
| − | ** '''1''' reactions found over '''2''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * Category: [[annotation]]
| + | |
| − | ** Source: [[annotation-esiliculosus_genome]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| | == External links == | | == External links == |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | {{#set: taxonomic range=TAX-1883}} |
| − | {{#set: common name=Pectin lyase fold}} | + | {{#set: common name=dTDP-α-D-mycaminose biosynthesis}} |
| − | {{#set: ec number=EC-4.2.2.10}}
| + | {{#set: reaction found=1}} |
| − | {{#set: gene associated=Ec-08_000940|Ec-04_001770|Ec-08_000930|Ec-18_004360|Ec-13_002310|Ec-21_001490|Ec-14_000190|Ec-12_000410|Ec-00_009490|Ec-21_003140|Ec-02_001170|Ec-08_000860|Ec-00_010800|Ec-13_002650|Ec-20_003100|Ec-02_001160|Ec-14_000350|Ec-00_006370|Ec-23_004040|Ec-25_001080|Ec-08_000920|Ec-13_002330|Ec-09_004260|Ec-09_004230|Ec-00_011490|Ec-14_004740|Ec-20_003120|Ec-21_001360|Ec-13_002640}}
| + | {{#set: total reaction=5}} |
| − | {{#set: in pathway=PWY-7243}} | + | {{#set: completion rate=20.0}} |
| − | {{#set: reconstruction category=annotation}} | + | |
| − | {{#set: reconstruction source=annotation-esiliculosus_genome}} | + | |
| − | {{#set: reconstruction tool=pathwaytools}}
| + | |
