Difference between revisions of "RXN-13614"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE--TRNA-LIGASE-RXN GLYCINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13614 RXN-13614] == * direction: ** LEFT-TO-RIGHT * common name: ** long chain acyl-coA synthet...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE--TRNA-LIGASE-RXN GLYCINE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13614 RXN-13614] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Glycyl-tRNA synthetase
+
** long chain acyl-coA synthetase
−
** Anticodon-binding
+
** long chain acyl-CoA synthetase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.1.1.14 EC-6.1.1.14]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[GLY-tRNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-GLY-tRNAs]][c] '''+''' 1 [[AMP]][c]
+
** 1 [[CO-A]][c] '''+''' 1 [[CPD-3617]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-10267]][c] '''+''' 1 [[AMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 H+[c] '''+''' 1 glycine[c] '''+''' 1 a tRNAgly[c] '''=>''' 1 diphosphate[c] '''+''' 1 a glycyl-[tRNAgly][c] '''+''' 1 AMP[c]
+
** 1 coenzyme A[c] '''+''' 1 decanoate[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 decanoyl-CoA[c] '''+''' 1 AMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-07_006780]]
+
* Gene: [[Ec-12_008720]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* Gene: [[Ec-07_006790]]
+
* Gene: [[Ec-01_001560]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* Gene: [[Ec-14_006280]]
+
* Gene: [[Ec-02_006430]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-03_003710]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[PWY-7094]], fatty acid salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7094 PWY-7094]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 35: Line 38:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16013 16013]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03654 R03654]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P41250 P41250]
 
−
** [http://www.uniprot.org/uniprot/P54380 P54380]
 
−
** [http://www.uniprot.org/uniprot/Q9ZCB1 Q9ZCB1]
 
−
** [http://www.uniprot.org/uniprot/P43822 P43822]
 
−
** [http://www.uniprot.org/uniprot/P54381 P54381]
 
−
** [http://www.uniprot.org/uniprot/O51344 O51344]
 
−
** [http://www.uniprot.org/uniprot/Q46371 Q46371]
 
−
** [http://www.uniprot.org/uniprot/Q9ZCB0 Q9ZCB0]
 
−
** [http://www.uniprot.org/uniprot/Q9WY59 Q9WY59]
 
−
** [http://www.uniprot.org/uniprot/P43821 P43821]
 
−
** [http://www.uniprot.org/uniprot/O83678 O83678]
 
−
** [http://www.uniprot.org/uniprot/Q9WY60 Q9WY60]
 
−
** [http://www.uniprot.org/uniprot/Q9PPK3 Q9PPK3]
 
−
** [http://www.uniprot.org/uniprot/P56454 P56454]
 
−
** [http://www.uniprot.org/uniprot/Q9PN63 Q9PN63]
 
−
** [http://www.uniprot.org/uniprot/Q57681 Q57681]
 
−
** [http://www.uniprot.org/uniprot/P67029 P67029]
 
−
** [http://www.uniprot.org/uniprot/O67081 O67081]
 
−
** [http://www.uniprot.org/uniprot/O67898 O67898]
 
−
** [http://www.uniprot.org/uniprot/O59235 O59235]
 
−
** [http://www.uniprot.org/uniprot/P47493 P47493]
 
−
** [http://www.uniprot.org/uniprot/Q9ZKP1 Q9ZKP1]
 
−
** [http://www.uniprot.org/uniprot/Q9JW67 Q9JW67]
 
−
** [http://www.uniprot.org/uniprot/P56453 P56453]
 
−
** [http://www.uniprot.org/uniprot/O27874 O27874]
 
−
** [http://www.uniprot.org/uniprot/Q9ZKM9 Q9ZKM9]
 
−
** [http://www.uniprot.org/uniprot/Q9CGK0 Q9CGK0]
 
−
** [http://www.uniprot.org/uniprot/P38088 P38088]
 
−
** [http://www.uniprot.org/uniprot/Q06817 Q06817]
 
−
** [http://www.uniprot.org/uniprot/Q51114 Q51114]
 
−
** [http://www.uniprot.org/uniprot/P75425 P75425]
 
−
** [http://www.uniprot.org/uniprot/Q55716 Q55716]
 
−
** [http://www.uniprot.org/uniprot/P00960 P00960]
 
−
** [http://www.uniprot.org/uniprot/P00961 P00961]
 
−
** [http://www.uniprot.org/uniprot/Q8L785 Q8L785]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Glycyl-tRNA synthetase}}
+
{{#set: common name=long chain acyl-coA synthetase}}
−
{{#set: common name=Anticodon-binding}}
+
{{#set: common name=long chain acyl-CoA synthetase}}
−
{{#set: ec number=EC-6.1.1.14}}
+
{{#set: ec number=EC-6.2.1.3}}
−
{{#set: gene associated=Ec-07_006780|Ec-07_006790|Ec-14_006280}}
+
{{#set: gene associated=Ec-12_008720|Ec-01_001560|Ec-02_006430|Ec-03_003710}}
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
{{#set: in pathway=PWY-7094}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:04, 21 March 2018

Reaction RXN-13614

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • long chain acyl-coA synthetase
    • long chain acyl-CoA synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 decanoate[c] + 1 ATP[c] => 1 diphosphate[c] + 1 decanoyl-CoA[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7094, fatty acid salvage: PWY-7094
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-13614&oldid=24358"