Difference between revisions of "Ec-16 002340"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9623 RXN-9623] == * direction: ** LEFT-TO-RIGHT * common name: ** long chain acyl-coA synthetas...")
(Created page with "Category:Gene == Gene Ec-16_002340 == * left end position: ** 2576801 * transcription direction: ** POSITIVE * right end position: ** 2582635 * centisome position: ** 48.2...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9623 RXN-9623] ==
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== Gene Ec-16_002340 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 2576801
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* common name:
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* transcription direction:
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** long chain acyl-coA synthetase
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** POSITIVE
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** long chain acyl-CoA synthetase
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* right end position:
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* ec number:
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** 2582635
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
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* centisome position:
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** 48.27591   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0653_0001
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** Esi0653_0001
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-11135]]
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** 1 [[PALMITATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[PALMITYL-COA]][c] '''+''' 1 [[AMP]][c]
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* With common name(s):
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** 1 palmitate[c] '''+''' 1 coenzyme A[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 palmitoyl-CoA[c] '''+''' 1 AMP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-12_008720]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-01_001560]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-02_006430]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-03_003710]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-5972]], stearate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5972 PWY-5972]
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** '''2''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''28''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=2576801}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30754 30754]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=2582635}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01280 R01280]
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{{#set: centisome position=48.27591    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Esi_0653_0001|Esi0653_0001}}
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{{#set: common name=long chain acyl-coA synthetase}}
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{{#set: reaction associated=RXN-11135}}
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{{#set: common name=long chain acyl-CoA synthetase}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: gene associated=Ec-12_008720|Ec-01_001560|Ec-02_006430|Ec-03_003710}}
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{{#set: in pathway=PWY-5972|PWY-5971}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:06, 21 March 2018

Gene Ec-16_002340

  • left end position:
    • 2576801
  • transcription direction:
    • POSITIVE
  • right end position:
    • 2582635
  • centisome position:
    • 48.27591
  • Synonym(s):
    • Esi_0653_0001
    • Esi0653_0001

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-16_002340&oldid=24582"