Difference between revisions of "RXN-5341"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7270 PWY-7270] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5341 RXN-5341] == * direction: ** LEFT-TO-RIGHT * common name: ** Beta-glucosidase, family GH1...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7270 PWY-7270] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5341 RXN-5341] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** L-methionine salvage cycle II (plants)
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** Beta-glucosidase, family GH1
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** Beta-glucosidase, family GH3
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** Beta-glucosidase, family GH30
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* ec number:
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** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
 
* Synonym(s):
 
* Synonym(s):
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** 5'-methylthioadenosine cycle
 
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** superpathway of L-methionine recycling (plants)
 
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** MTA cycle
 
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** Yang cycle
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''3''' reactions found over '''7''' reactions in the full pathway
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* With identifiers:
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* [[4.4.1.14-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[LINAMARIN]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[2-HYDROXY-2-METHYLPROPANENITRILE]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Ec-04_003460]]
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** 1 H2O[c] '''+''' 1 linamarin[c] '''=>''' 1 D-glucopyranose[c] '''+''' 1 acetone cyanohydrin[c]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** [[orthology-aragem]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[PWY-4361]]
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* Gene: [[Ec-26_002410]]
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** 0 associated gene:
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** Source: [[annotation-esiliculosus_genome]]
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* [[SAM-PWY]]
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*** Assignment: EC-NUMBER
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** 0 associated gene:
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* Gene: [[Ec-04_002190]]
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== Reaction(s) not found ==
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** Source: [[annotation-esiliculosus_genome]]
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-6754 PWY-6754]
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-6754 PWY-6754]
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* Gene: [[Ec-07_005240]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-20_004800]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-07_001850]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-3121]], linamarin degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3121 PWY-3121]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7091]], linustatin bioactivation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7091 PWY-7091]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-33090}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=L-methionine salvage cycle II (plants)}}
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{{#set: common name=Beta-glucosidase, family GH1}}
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{{#set: common name=5'-methylthioadenosine cycle|superpathway of L-methionine recycling (plants)|MTA cycle|Yang cycle}}
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{{#set: common name=Beta-glucosidase, family GH3}}
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{{#set: reaction found=3}}
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{{#set: common name=Beta-glucosidase, family GH30}}
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{{#set: total reaction=7}}
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{{#set: ec number=EC-3.2.1.21}}
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{{#set: completion rate=43.0}}
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{{#set: gene associated=Ec-26_002410|Ec-04_002190|Ec-07_005240|Ec-20_004800|Ec-07_001850}}
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{{#set: in pathway=PWY-3121|PWY-7091}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:07, 21 March 2018

Reaction RXN-5341

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Beta-glucosidase, family GH1
    • Beta-glucosidase, family GH3
    • Beta-glucosidase, family GH30
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-3121, linamarin degradation: PWY-3121
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7091, linustatin bioactivation: PWY-7091
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-5341&oldid=24663"