Difference between revisions of "RXN-10038"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-28889 TAX-2...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10038 RXN-10038] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/2.7...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10038 RXN-10038] ==
* taxonomic range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-28889 TAX-28889]
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** REVERSIBLE
* common name:
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* ec number:
** 3-hydroxypropanoate/4-hydroxybutanate cycle
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** [http://enzyme.expasy.org/EC/2.7.1.164 EC-2.7.1.164]
 
* Synonym(s):
 
* Synonym(s):
** 3-HP/4-HB cycle
 
** 3-hydroxypropionate/4-hydroxybutyrate cycle
 
  
== Reaction(s) found ==
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== Reaction Formula ==
'''6''' reactions found over '''16''' reactions in the full pathway
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* With identifiers:
* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[L-seryl-SEC-tRNAs]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[O-phospho-L-seryl-tRNASecs]][c]
** 3 associated gene(s):
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* With common name(s):
*** [[Ec-26_003940]]
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** 1 ATP[c] '''+''' 1 an L-seryl-[tRNAsec][c] '''<=>''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 an O-phospho-L-seryl-[tRNASec][c]
*** [[Ec-24_000870]]
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*** [[Ec-22_002850]]
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== Genes associated with this reaction  ==
** 2 reconstruction source(s) associated:
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== Pathways  ==
*** [[annotation-esiliculosus_genome]]
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* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281]
*** [[orthology-aragem]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
* [[ACETYL-COA-CARBOXYLTRANSFER-RXN]]
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== Reconstruction information  ==
** 7 associated gene(s):
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* Category: [[annotation]]
*** [[Ec-19_003040]]
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** Source: [[annotation-esiliculosus_genome]]
*** [[Ec-03_001890]]
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*** Tool: [[pathwaytools]]
*** [[Ec-14_002460]]
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*** [[Ec-01_009720]]
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*** [[Ec-01_010970]]
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*** [[Ec-19_003230]]
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*** [[Ec-20_002520]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[PROPIONYL-COA-CARBOXY-RXN]]
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** 1 associated gene(s):
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*** [[Ec-01_010970]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-11662]]
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** 2 associated gene(s):
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*** [[Ec-19_005290]]
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*** [[Ec-14_006530]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RXN-11667]]
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** 2 associated gene(s):
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*** [[Ec-17_000320]]
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*** [[Ec-14_006530]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RXN-6383]]
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** 2 associated gene(s):
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*** [[Ec-14_006530]]
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*** [[Ec-17_000320]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=METHYLMALONYL-COA-EPIM-RXN METHYLMALONYL-COA-EPIM-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=METHYLMALONYL-COA-MUT-RXN METHYLMALONYL-COA-MUT-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11002 RXN-11002]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8890 RXN-8890]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8891 RXN-8891]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8963 RXN-8963]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8974 RXN-8974]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9086 RXN-9086]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9087 RXN-9087]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9092 RXN-9092]
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== External links  ==
 
== External links  ==
{{#set: taxonomic range=TAX-28889}}
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* LIGAND-RXN:
{{#set: common name=3-hydroxypropanoate/4-hydroxybutanate cycle}}
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** [http://www.genome.jp/dbget-bin/www_bget?R08223 R08223]
{{#set: common name=3-HP/4-HB cycle|3-hydroxypropionate/4-hydroxybutyrate cycle}}
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{{#set: direction=REVERSIBLE}}
{{#set: reaction found=6}}
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{{#set: ec number=EC-2.7.1.164}}
{{#set: total reaction=16}}
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{{#set: in pathway=PWY-6281}}
{{#set: completion rate=38.0}}
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{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:08, 21 March 2018

Reaction RXN-10038

Reaction Formula

Genes associated with this reaction

Pathways

  • PWY-6281, L-selenocysteine biosynthesis II (archaea and eukaryotes): PWY-6281
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links