Difference between revisions of "CALVIN-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1501_METACYC18.5 RXN-1501_METACYC18.5] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == React...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TA...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1501_METACYC18.5 RXN-1501_METACYC18.5] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-39119 TAX-39119]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-38254 TAX-38254]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-29197 TAX-29197]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-38410 TAX-38410]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5747 TAX-5747]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2864 TAX-2864]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-877183 TAX-877183]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2836 TAX-2836]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3027 TAX-3027]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2830 TAX-2830]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2833 TAX-2833]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3041 TAX-3041]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-33682]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2763 TAX-2763]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2870 TAX-2870]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2825 TAX-2825]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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* common name:
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** Calvin-Benson-Bassham cycle
 
* Synonym(s):
 
* Synonym(s):
 +
** photosynthetic dark reactions
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** photosynthetic CO2 fixation
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** reductive pentose phosphate pathway
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** Calvin cycle
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** carbon fixation
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** Calvin-Benson cycle
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''13''' reactions found over '''13''' reactions in the full pathway
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** 1.0 [[WATER]][c] '''+''' 1.0 [[PHOSPHATIDYLCHOLINE]][c] '''=>''' 1.0 [[LINOLENIC_ACID]][c] '''+''' 1.0 [[2-Lysophosphatidylcholines]][c]
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* [[1.2.1.13-RXN]]
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* With common name(s):
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** 0 associated gene:
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** 1.0 H2O[c] '''+''' 1.0 a phosphatidylcholine[c] '''=>''' 1.0 α-linolenate[c] '''+''' 1.0 a 1-acyl-sn-glycero-3-phosphocholine[c]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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* [[1TRANSKETO-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 associated gene(s):
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* Gene: [[Ec-04_004650]]
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*** [[Ec-20_002600]]
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** Source: [[manual-1_cycrxns_to_add]]
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** 2 reconstruction source(s) associated:
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* Gene: [[Ec-21_005150]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[manual-1_cycrxns_to_add]]
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*** [[orthology-aragem]]
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== Pathways  ==
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* [[2TRANSKETO-RXN]]
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== Reconstruction information  ==
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** 1 associated gene(s):
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* Category: [[manual]]
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*** [[Ec-20_002600]]
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** Source: [[manual-1_cycrxns_to_add]]
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** 2 reconstruction source(s) associated:
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*** Comment: [[reaction from metacyc 18.5 to produce linolenic_acid. reaction phospholipase-a2-rxn deleted in return because implies linolenic_acid compound class only]]
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[F16ALDOLASE-RXN]]
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** 4 associated gene(s):
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*** [[Ec-10_004980]]
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*** [[Ec-01_008040]]
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*** [[Ec-10_000880]]
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*** [[Ec-14_001680]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[F16BDEPHOS-RXN]]
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** 7 associated gene(s):
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*** [[Ec-06_004200]]
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*** [[Ec-04_004710]]
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*** [[Ec-17_003090]]
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*** [[Ec-12_004070]]
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*** [[Ec-14_005760]]
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*** [[Ec-22_000360]]
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*** [[Ec-21_001790]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[PHOSGLYPHOS-RXN]]
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** 6 associated gene(s):
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*** [[Ec-12_004530]]
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*** [[Ec-21_005710]]
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*** [[Ec-21_004220]]
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*** [[Ec-08_002400]]
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*** [[Ec-12_004550]]
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*** [[Ec-01_001350]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[PHOSPHORIBULOKINASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-27_003910]]
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*** [[Ec-26_002450]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RIB5PISOM-RXN]]
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** 1 associated gene(s):
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*** [[Ec-08_003540]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN]]
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** 1 associated gene(s):
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*** [[Ec-12_007560]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RIBULP3EPIM-RXN]]
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** 2 associated gene(s):
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*** [[Ec-07_002390]]
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*** [[Ec-27_003930]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[SEDOBISALDOL-RXN]]
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** 1 associated gene(s):
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*** [[Ec-10_004980]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[SEDOHEPTULOSE-BISPHOSPHATASE-RXN]]
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** 3 associated gene(s):
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*** [[Ec-04_004710]]
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*** [[Ec-21_001790]]
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*** [[Ec-22_000360]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[TRIOSEPISOMERIZATION-RXN]]
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** 4 associated gene(s):
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*** [[Ec-08_000500]]
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*** [[Ec-24_000360]]
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*** [[Ec-03_002790]]
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*** [[Ec-23_004160]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* PLANTCYC : CALVIN-PWY
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{{#set: gene associated=Ec-04_004650|Ec-21_005150}}
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* ARACYC:
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{{#set: in pathway=}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
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{{#set: reconstruction category=manual}}
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{{#set: taxonomic range=TAX-1117}}
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{{#set: reconstruction source=manual-1_cycrxns_to_add}}
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{{#set: taxonomic range=TAX-39119}}
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{{#set: reconstruction comment=reaction from metacyc 18.5 to produce linolenic_acid. reaction phospholipase-a2-rxn deleted in return because implies linolenic_acid compound class only}}
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{{#set: taxonomic range=TAX-38254}}
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{{#set: taxonomic range=TAX-29197}}
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{{#set: taxonomic range=TAX-38410}}
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{{#set: taxonomic range=TAX-5747}}
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{{#set: taxonomic range=TAX-2864}}
 +
{{#set: taxonomic range=TAX-877183}}
 +
{{#set: taxonomic range=TAX-2836}}
 +
{{#set: taxonomic range=TAX-3027}}
 +
{{#set: taxonomic range=TAX-2830}}
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{{#set: taxonomic range=TAX-2833}}
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{{#set: taxonomic range=TAX-3041}}
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{{#set: taxonomic range=TAX-33682}}
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{{#set: taxonomic range=TAX-2763}}
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{{#set: taxonomic range=TAX-2870}}
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{{#set: taxonomic range=TAX-2825}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: common name=Calvin-Benson-Bassham cycle}}
 +
{{#set: common name=photosynthetic dark reactions|photosynthetic CO2 fixation|reductive pentose phosphate pathway|Calvin cycle|carbon fixation|Calvin-Benson cycle}}
 +
{{#set: reaction found=13}}
 +
{{#set: total reaction=13}}
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{{#set: completion rate=100.0}}

Latest revision as of 19:09, 21 March 2018

Pathway CALVIN-PWY

Reaction(s) found

13 reactions found over 13 reactions in the full pathway

Reaction(s) not found

External links













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