Difference between revisions of "RXN-16380"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TA...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16380 RXN-16380] == * direction: ** LEFT-TO-RIGHT * common name: ** long chain acyl-coA synthet...")
 
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16380 RXN-16380] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
+
** LEFT-TO-RIGHT
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
+
 
* common name:
 
* common name:
−
** N10-formyl-tetrahydrofolate biosynthesis
+
** long chain acyl-coA synthetase
 +
** long chain acyl-CoA synthetase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
−
** N10-formyl-THF biosynthesis
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''9''' reactions found over '''9''' reactions in the full pathway
+
* With identifiers:
−
* [[1.5.1.20-RXN]]
+
** 1 [[ATP]][c] '''+''' 1 [[STEARIC_ACID]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[STEAROYL-COA]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
−
** 2 associated gene(s):
+
* With common name(s):
−
*** [[Ec-03_002180]]
+
** 1 ATP[c] '''+''' 1 stearate[c] '''+''' 1 coenzyme A[c] '''=>''' 1 stearoyl-CoA[c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
−
*** [[Ec-08_003880]]
+
 
−
** 1 reconstruction source(s) associated:
+
== Genes associated with this reaction  ==
−
*** [[annotation-esiliculosus_genome]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[5-FORMYL-THF-CYCLO-LIGASE-RXN]]
+
* Gene: [[Ec-01_001560]]
−
** 1 associated gene(s):
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[Ec-01_009140]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** 1 reconstruction source(s) associated:
+
* Gene: [[Ec-02_006430]]
−
*** [[annotation-esiliculosus_genome]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* [[DIHYDROFOLATEREDUCT-RXN]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** 4 associated gene(s):
+
* Gene: [[Ec-12_008720]]
−
*** [[Ec-15_001370]]
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[Ec-07_007470]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
*** [[Ec-27_004630]]
+
* Gene: [[Ec-03_003710]]
−
*** [[Ec-14_004070]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** 1 reconstruction source(s) associated:
+
*** Assignment: AUTOMATED-NAME-MATCH
−
*** [[annotation-esiliculosus_genome]]
+
== Pathways  ==
−
* [[GCVMULTI-RXN]]
+
* [[PWY-5989]], stearate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5989 PWY-5989]
−
** 0 associated gene:
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
** 1 reconstruction source(s) associated:
+
== Reconstruction information  ==
−
*** [[annotation-esiliculosus_genome]]
+
* Category: [[annotation]]
−
* [[GLYOHMETRANS-RXN]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** 2 associated gene(s):
+
*** Tool: [[pathwaytools]]
−
*** [[Ec-14_004260]]
+
−
*** [[Ec-24_002640]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[HOMOCYSMETB12-RXN]]
+
−
** 2 associated gene(s):
+
−
*** [[Ec-06_000970]]
+
−
*** [[Ec-06_000980]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[METHENYLTHFCYCLOHYDRO-RXN]]
+
−
** 2 associated gene(s):
+
−
*** [[Ec-14_004070]]
+
−
*** [[Ec-15_001370]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[METHYLENETHFDEHYDROG-NADP-RXN]]
+
−
** 3 associated gene(s):
+
−
*** [[Ec-15_001370]]
+
−
*** [[Ec-14_004070]]
+
−
*** [[Ec-07_007470]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[THYMIDYLATESYN-RXN]]
+
−
** 1 associated gene(s):
+
−
*** [[Ec-27_004630]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
== Reaction(s) not found ==
+
 
== External links  ==
 
== External links  ==
−
* ECOCYC:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
+
{{#set: common name=long chain acyl-coA synthetase}}
−
{{#set: taxonomic range=TAX-4751}}
+
{{#set: common name=long chain acyl-CoA synthetase}}
−
{{#set: taxonomic range=TAX-33208}}
+
{{#set: ec number=EC-6.2.1.3}}
−
{{#set: taxonomic range=TAX-2}}
+
{{#set: gene associated=Ec-01_001560|Ec-02_006430|Ec-12_008720|Ec-03_003710}}
−
{{#set: common name=N10-formyl-tetrahydrofolate biosynthesis}}
+
{{#set: in pathway=PWY-5989}}
−
{{#set: common name=N10-formyl-THF biosynthesis}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reaction found=9}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
−
{{#set: total reaction=9}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: completion rate=100.0}}
+

Latest revision as of 19:11, 21 March 2018

Reaction RXN-16380

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • long chain acyl-coA synthetase
    • long chain acyl-CoA synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 stearate[c] + 1 coenzyme A[c] => 1 stearoyl-CoA[c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5989, stearate biosynthesis II (bacteria and plants): PWY-5989
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-16380&oldid=25217"