Difference between revisions of "RXN-12871"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN] == * direction: ** L...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12871 RXN-12871] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12871 RXN-12871] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
* common name:
 
** peptide-aspartate beta-dioxygenase
 
* ec number:
 
** [http://enzyme.expasy.org/EC/1.14.11.16 EC-1.14.11.16]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[Protein-L-Aspartates]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Peptide-3-hydroxy-L-Aspartates]][c] '''+''' 1 [[SUC]][c]
+
** 1 [[CPD-13913]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CPD-13912]][c]
 
* With common name(s):
 
* With common name(s):
** 1 oxygen[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 a [protein]-L-aspartate[c] '''=>''' 1 CO2[c] '''+''' 1 a [protein]-3-hydroxy-L-aspartate[c] '''+''' 1 succinate[c]
+
** 1 2-carboxy-L-xylonolactone[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 2-carboxy-L-threo-pentonate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
Genes have been associated with this reaction based on different elements listed below.
 
* Gene: [[Ec-06_006420]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: GO-TERM
 
* Gene: [[Ec-24_000830]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: GO-TERM
 
* Gene: [[Ec-24_001390]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: GO-TERM
 
* Gene: [[Ec-14_006050]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: GO-TERM
 
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-6959]], L-ascorbate degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6959 PWY-6959]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11508 11508]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R04073 R04073]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/Q28056 Q28056]
 
** [http://www.uniprot.org/uniprot/Q93178 Q93178]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=peptide-aspartate beta-dioxygenase}}
+
{{#set: in pathway=PWY-6959}}
{{#set: ec number=EC-1.14.11.16}}
+
{{#set: gene associated=Ec-06_006420|Ec-24_000830|Ec-24_001390|Ec-14_006050}}
+
{{#set: in pathway=}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:12, 21 March 2018

Reaction RXN-12871

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2-carboxy-L-xylonolactone[c] + 1 H2O[c] => 1 H+[c] + 1 2-carboxy-L-threo-pentonate[c]

Genes associated with this reaction

Pathways

  • PWY-6959, L-ascorbate degradation V: PWY-6959
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links