Difference between revisions of "PWY-6558"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2601 RXN0-2601] == * direction: ** LEFT-TO-RIGHT * common name: ** DNA glycosylase ** DNA-(apu...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2601 RXN0-2601] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
 
* common name:
 
* common name:
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** DNA glycosylase
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** heparan sulfate biosynthesis (late stages)
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** DNA-(apurinic or apyrimidinic site) lyase
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* ec number:
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** [http://enzyme.expasy.org/EC/4.2.99.18 EC-4.2.99.18]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''13''' reactions in the full pathway
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** 1 [[Damaged-DNA-Pyrimidine]][c] '''=>''' 1 [[DNA-containing-a-Apyrimidinic-Sites]][c]
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* [[2.4.1.223-RXN]]
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* With common name(s):
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** 7 associated gene(s):
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** 1 a damaged DNA pyrimidine[c] '''=>''' 1 a DNA containing an apyrimidinic site[c]
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*** [[Ec-14_005460]]
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*** [[Ec-15_002870]]
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== Genes associated with this reaction  ==
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*** [[Ec-08_002720]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Ec-14_003840]]
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* Gene: [[Ec-16_004990]]
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*** [[Ec-02_004080]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-23_000390]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Ec-23_003230]]
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* Gene: [[Ec-19_001460]]
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** 1 reconstruction source(s) associated:
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** Source: [[annotation-esiliculosus_genome]]
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*** [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Reaction(s) not found ==
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* Gene: [[Ec-01_006350]]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.224-RXN 2.4.1.224-RXN]
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** Source: [[annotation-esiliculosus_genome]]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.225-RXN 2.4.1.225-RXN]
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*** Assignment: GO-TERM
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* [http://metacyc.org/META/NEW-IMAGE?object=2.8.2.23-RXN 2.8.2.23-RXN]
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* Gene: [[Ec-00_001490]]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.8.2.29-RXN 2.8.2.29-RXN]
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** Source: [[annotation-esiliculosus_genome]]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.8.2.30-RXN 2.8.2.30-RXN]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=5.1.3.17-RXN 5.1.3.17-RXN]
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* Gene: [[Ec-18_003720]]
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* [http://metacyc.org/META/NEW-IMAGE?object=HEPARITIN-SULFOTRANSFERASE-RXN HEPARITIN-SULFOTRANSFERASE-RXN]
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** Source: [[annotation-esiliculosus_genome]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11557 RXN-11557]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11558 RXN-11558]
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== Pathways  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11562 RXN-11562]
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== Reconstruction information  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11563 RXN-11563]
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* Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16327 RXN-16327]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-33208}}
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{{#set: common name=DNA glycosylase}}
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{{#set: common name=heparan sulfate biosynthesis (late stages)}}
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{{#set: common name=DNA-(apurinic or apyrimidinic site) lyase}}
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{{#set: reaction found=1}}
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{{#set: ec number=EC-4.2.99.18}}
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{{#set: total reaction=13}}
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{{#set: gene associated=Ec-16_004990|Ec-19_001460|Ec-01_006350|Ec-00_001490|Ec-18_003720}}
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{{#set: completion rate=8.0}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:12, 21 March 2018

Pathway PWY-6558

  • taxonomic range:
  • common name:
    • heparan sulfate biosynthesis (late stages)
  • Synonym(s):

Reaction(s) found

1 reactions found over 13 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-6558&oldid=25291"