Difference between revisions of "CYSTEINE--TRNA-LIGASE-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD0-1028 CPD0-1028] == * smiles: ** CC(=CCCC(C)=CCCC(C)=CCCC(C)=CCOP(=O)([O-])OP(=O)([O-])[O-]...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE--TRNA-LIGASE-RXN CYSTEINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
 
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD0-1028 CPD0-1028] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE--TRNA-LIGASE-RXN CYSTEINE--TRNA-LIGASE-RXN] ==
−
* smiles:
+
* direction:
−
** CC(=CCCC(C)=CCCC(C)=CCCC(C)=CCOP(=O)([O-])OP(=O)([O-])[O-])C
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=OINNEUNVOZHBOX-KWBDAJKESA-K
+
 
* common name:
 
* common name:
−
** 2-cis,6-trans,10-trans-geranylgeranyl diphosphate
+
** Cysteinyl-tRNA Synthetase
−
* molecular weight:
+
** Aminoacyl-tRNA synthetase, class 1a, anticodon-binding
−
** 447.424   
+
** Cysteinyl-tRNA synthetase/mycothiol ligase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.1.1.16 EC-6.1.1.16]
 
* Synonym(s):
 
* Synonym(s):
−
** di-trans,poly-cis-geranylgeranyl diphosphate
 
−
** ω,E,E,Z-geranylgeranyl diphosphate
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
+
* With identifiers:
−
== Reaction(s) of unknown directionality ==
+
** 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CYS-tRNAs]][c] '''+''' 1 [[CYS]][c] '''=>''' 1 [[Charged-CYS-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
−
* [[RXN-13323]]
+
* With common name(s):
−
* [[RXN0-5180]]
+
** 1 ATP[c] '''+''' 1 H+[c] '''+''' 1 a tRNAcys[c] '''+''' 1 L-cysteine[c] '''=>''' 1 an L-cysteinyl-[tRNAcys][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-10_004180]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-02_002270]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-12_001440]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* LIGAND-RXN:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25245826 25245826]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03650 R03650]
−
* CHEBI:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=62639 62639]
+
** [http://www.uniprot.org/uniprot/Q9PPB8 Q9PPB8]
−
* LIGAND-CPD:
+
** [http://www.uniprot.org/uniprot/Q06752 Q06752]
−
** [http://www.genome.jp/dbget-bin/www_bget?C11356 C11356]
+
** [http://www.uniprot.org/uniprot/P43816 P43816]
−
{{#set: smiles=CC(=CCCC(C)=CCCC(C)=CCCC(C)=CCOP(=O)([O-])OP(=O)([O-])[O-])C}}
+
** [http://www.uniprot.org/uniprot/O29836 O29836]
−
{{#set: inchi key=InChIKey=OINNEUNVOZHBOX-KWBDAJKESA-K}}
+
** [http://www.uniprot.org/uniprot/Q9CEJ0 Q9CEJ0]
−
{{#set: common name=2-cis,6-trans,10-trans-geranylgeranyl diphosphate}}
+
** [http://www.uniprot.org/uniprot/O58370 O58370]
−
{{#set: molecular weight=447.424    }}
+
** [http://www.uniprot.org/uniprot/O83129 O83129]
−
{{#set: common name=di-trans,poly-cis-geranylgeranyl diphosphate|ω,E,E,Z-geranylgeranyl diphosphate}}
+
** [http://www.uniprot.org/uniprot/Q9ZE62 Q9ZE62]
−
{{#set: reversible reaction associated=RXN-13323|RXN0-5180}}
+
** [http://www.uniprot.org/uniprot/Q9ZKW6 Q9ZKW6]
 +
** [http://www.uniprot.org/uniprot/Q9WZH8 Q9WZH8]
 +
** [http://www.uniprot.org/uniprot/P41259 P41259]
 +
** [http://www.uniprot.org/uniprot/O51545 O51545]
 +
** [http://www.uniprot.org/uniprot/Q9Z6X4 Q9Z6X4]
 +
** [http://www.uniprot.org/uniprot/O67163 O67163]
 +
** [http://www.uniprot.org/uniprot/Q9JWJ3 Q9JWJ3]
 +
** [http://www.uniprot.org/uniprot/P47495 P47495]
 +
** [http://www.uniprot.org/uniprot/P75423 P75423]
 +
** [http://www.uniprot.org/uniprot/P74330 P74330]
 +
** [http://www.uniprot.org/uniprot/Q9UWP2 Q9UWP2]
 +
** [http://www.uniprot.org/uniprot/P21888 P21888]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Cysteinyl-tRNA Synthetase}}
 +
{{#set: common name=Aminoacyl-tRNA synthetase, class 1a, anticodon-binding}}
 +
{{#set: common name=Cysteinyl-tRNA synthetase/mycothiol ligase}}
 +
{{#set: ec number=EC-6.1.1.16}}
 +
{{#set: gene associated=Ec-10_004180|Ec-02_002270|Ec-12_001440}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:15, 21 March 2018

Reaction CYSTEINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Cysteinyl-tRNA Synthetase
    • Aminoacyl-tRNA synthetase, class 1a, anticodon-binding
    • Cysteinyl-tRNA synthetase/mycothiol ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 H+[c] + 1 a tRNAcys[c] + 1 L-cysteine[c] => 1 an L-cysteinyl-[tRNAcys][c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=CYSTEINE--TRNA-LIGASE-RXN&oldid=25573"