Difference between revisions of "Ec-09 004680"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NARINGENIN-3-DIOXYGENASE-RXN NARINGENIN-3-DIOXYGENASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec nu...")
(Created page with "Category:Gene == Gene Ec-09_004680 == * left end position: ** 5307215 * transcription direction: ** NEGATIVE * right end position: ** 5311116 * centisome position: ** 94.5...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NARINGENIN-3-DIOXYGENASE-RXN NARINGENIN-3-DIOXYGENASE-RXN] ==
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== Gene Ec-09_004680 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 5307215
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/1.14.11.9 EC-1.14.11.9]
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** NEGATIVE
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* right end position:
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** 5311116
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* centisome position:
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** 94.54949   
 
* Synonym(s):
 
* Synonym(s):
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** Flavonone 3-hydroxylase
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** Esi_0049_0025
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** Naringenin,2-oxoglutarate 3-dioxygenase
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** Esi0049_0025
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** GPX
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[GLUTATHIONE-PEROXIDASE-RXN]]
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[NARINGENIN-CMPD]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''=>''' 1 [[DIHYDROKAEMPFEROL-CMPD]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 oxygen[c] '''+''' 1 (2S)-naringenin[c] '''+''' 1 2-oxoglutarate[c] '''=>''' 1 (+)-dihydrokaempferol[c] '''+''' 1 succinate[c] '''+''' 1 CO2[c]
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== Pathways associated ==
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* [[DETOX1-PWY-1]]
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== Genes associated with this reaction  ==
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* [[PWY-4081]]
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-08_003510]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-19_002760]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-19_002750]]
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** Source: [[orthology-aragem]]
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== Pathways ==
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* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
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** '''6''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: left end position=5307215}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02444 R02444]
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{{#set: transcription direction=NEGATIVE}}
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* UNIPROT:
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{{#set: right end position=5311116}}
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** [http://www.uniprot.org/uniprot/P28038 P28038]
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{{#set: centisome position=94.54949    }}
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** [http://www.uniprot.org/uniprot/Q07353 Q07353]
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{{#set: common name=Esi_0049_0025|Esi0049_0025|GPX}}
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** [http://www.uniprot.org/uniprot/Q06942 Q06942]
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{{#set: reaction associated=GLUTATHIONE-PEROXIDASE-RXN}}
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** [http://www.uniprot.org/uniprot/Q05964 Q05964]
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{{#set: pathway associated=DETOX1-PWY-1|PWY-4081}}
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** [http://www.uniprot.org/uniprot/Q05963 Q05963]
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** [http://www.uniprot.org/uniprot/Q05965 Q05965]
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** [http://www.uniprot.org/uniprot/Q43741 Q43741]
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** [http://www.uniprot.org/uniprot/Q42927 Q42927]
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** [http://www.uniprot.org/uniprot/Q40344 Q40344]
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** [http://www.uniprot.org/uniprot/O49047 O49047]
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** [http://www.uniprot.org/uniprot/Q43262 Q43262]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-1.14.11.9}}
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{{#set: common name=Flavonone 3-hydroxylase|Naringenin,2-oxoglutarate 3-dioxygenase}}
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{{#set: gene associated=Ec-08_003510|Ec-19_002760|Ec-19_002750}}
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{{#set: in pathway=PWY1F-FLAVSYN|PWY-6787}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-aragem}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 20:18, 21 March 2018

Gene Ec-09_004680

  • left end position:
    • 5307215
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 5311116
  • centisome position:
    • 94.54949
  • Synonym(s):
    • Esi_0049_0025
    • Esi0049_0025
    • GPX

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-09_004680&oldid=25957"