Difference between revisions of "Ec-24 001900"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALSYN-RXN MALSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Malate synthase * ec numb...")
(Created page with "Category:Gene == Gene Ec-24_001900 == * left end position: ** 2187107 * transcription direction: ** POSITIVE * right end position: ** 2209735 * centisome position: ** 43.8...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALSYN-RXN MALSYN-RXN] ==
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== Gene Ec-24_001900 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 2187107
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* common name:
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* transcription direction:
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** Malate synthase
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/2.3.3.9 EC-2.3.3.9]
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** 2209735
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* centisome position:
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** 43.850258   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0060_0030
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** Esi0060_0030
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ATPASE-RXN]]
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** 1 [[ACETYL-COA]][c] '''+''' 1 [[GLYOX]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[MAL]][c] '''+''' 1 [[CO-A]][c]
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* With common name(s):
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** 1 acetyl-CoA[c] '''+''' 1 glyoxylate[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 (S)-malate[c] '''+''' 1 coenzyme A[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-12_003860]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-aragem]]
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== Pathways  ==
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* [[PWY-7295]], L-arabinose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7295 PWY-7295]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7294]], xylose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7294 PWY-7294]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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* [[GLYOXDEG-PWY]], glycolate and glyoxylate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXDEG-PWY GLYOXDEG-PWY]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
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** '''10''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
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** '''11''' reactions found over '''18''' reactions in the full pathway
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* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=2187107}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18181 18181]
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{{#set: transcription direction=POSITIVE}}
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* PIR:
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{{#set: right end position=2209735}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40715 I40715]
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{{#set: centisome position=43.850258    }}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0195 JX0195]
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{{#set: common name=Esi_0060_0030|Esi0060_0030}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0196 JX0196]
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{{#set: reaction associated=ATPASE-RXN}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S15387 S15387]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17773 S17773]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17774 S17774]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26645 S26645]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44186 S44186]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S48493 S48493]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51788 S51788]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCNMU SYCNMU]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCSM2 SYCSM2]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYECMA SYECMA]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYHQMA SYHQMA]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYKVMA SYKVMA]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYRPMA SYRPMA]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T03412 T03412]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07690 T07690]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44752 T44752]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00472 R00472]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P42450 P42450]
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** [http://www.uniprot.org/uniprot/Q02216 Q02216]
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** [http://www.uniprot.org/uniprot/P28344 P28344]
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** [http://www.uniprot.org/uniprot/P28345 P28345]
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** [http://www.uniprot.org/uniprot/P30952 P30952]
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** [http://www.uniprot.org/uniprot/Q43827 Q43827]
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** [http://www.uniprot.org/uniprot/P21826 P21826]
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** [http://www.uniprot.org/uniprot/P37330 P37330]
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** [http://www.uniprot.org/uniprot/P17432 P17432]
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** [http://www.uniprot.org/uniprot/P17815 P17815]
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** [http://www.uniprot.org/uniprot/P08997 P08997]
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** [http://www.uniprot.org/uniprot/P21360 P21360]
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** [http://www.uniprot.org/uniprot/P08216 P08216]
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** [http://www.uniprot.org/uniprot/P13244 P13244]
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** [http://www.uniprot.org/uniprot/P49081 P49081]
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** [http://www.uniprot.org/uniprot/P45458 P45458]
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** [http://www.uniprot.org/uniprot/O32913 O32913]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Malate synthase}}
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{{#set: ec number=EC-2.3.3.9}}
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{{#set: gene associated=Ec-12_003860}}
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{{#set: in pathway=PWY-7295|PWY-7294|GLYOXDEG-PWY|P105-PWY|GLYOXYLATE-BYPASS|PWY-6969|PWY-6728|PWY-7118}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:20, 21 March 2018

Gene Ec-24_001900

  • left end position:
    • 2187107
  • transcription direction:
    • POSITIVE
  • right end position:
    • 2209735
  • centisome position:
    • 43.850258
  • Synonym(s):
    • Esi_0060_0030
    • Esi0060_0030

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-24_001900&oldid=26166"