Difference between revisions of "TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9670 RXN-9670] == * direction: ** REVERSIBLE * common name: ** Lyso-phosphatidylcholine acyltra...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN] == * direction: ** LEFT-TO-RIG...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9670 RXN-9670] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Lyso-phosphatidylcholine acyltransferase
+
** pseudouridine synthase
 +
** Pseudouridine synthase I, TruA, C-terminal
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.23 EC-2.3.1.23]
+
** [http://enzyme.expasy.org/EC/5.4.99.12 EC-5.4.99.12]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Glycerolipids]][c] '''+''' 1 [[OLEOYL-COA]][c] '''<=>''' 1 [[Oleoyl-lipid]][c] '''+''' 1 [[CO-A]][c]
+
** 1 [[tRNA-uridine-38-40]][c] '''=>''' 1 [[tRNA-pseudouridine-38-40]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a glycerolipid[c] '''+''' 1 oleoyl-CoA[c] '''<=>''' 1 a [glycerolipid]-oleate[c] '''+''' 1 coenzyme A[c]
+
** 1 a uridine38-40 in tRNA[c] '''=>''' 1 a pseudouridine38-40 in tRNA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-16_002160]]
+
* Gene: [[Ec-05_002890]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
*** Assignment: GO-TERM
 +
* Gene: [[Ec-22_001870]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-28_003620]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-14_000160]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-07_000310]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-27_004410]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-07_006750]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-26_004180]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-01_000690]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-27_005240]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-06_009680]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-09_003890]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-14_001350]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-08_003150]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-14_001540]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-14_001340]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-06_003220]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-20_000700]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-04_001540]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-06_004490]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-17_003530]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-21_005910]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-20_003420]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-19_003680]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-01_008790]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5368]], dimorphecolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5368 PWY-5368]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5995]], linoleate biosynthesis I (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5995 PWY-5995]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7618]], ricinoleate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7618 PWY-7618]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6433]], hydroxylated fatty acid biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6433 PWY-6433]
 
−
** '''7''' reactions found over '''22''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 34: Line 99:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
* LIGAND-RXN:
−
{{#set: common name=Lyso-phosphatidylcholine acyltransferase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03020 R03020]
−
{{#set: ec number=EC-2.3.1.23}}
+
* UNIPROT:
−
{{#set: gene associated=Ec-16_002160}}
+
** [http://www.uniprot.org/uniprot/Q59069 Q59069]
−
{{#set: in pathway=PWY-5368|PWY-5995|PWY-7618|PWY-6433}}
+
** [http://www.uniprot.org/uniprot/P47428 P47428]
 +
** [http://www.uniprot.org/uniprot/P45291 P45291]
 +
** [http://www.uniprot.org/uniprot/Q45557 Q45557]
 +
** [http://www.uniprot.org/uniprot/Q50291 Q50291]
 +
** [http://www.uniprot.org/uniprot/P53167 P53167]
 +
** [http://www.uniprot.org/uniprot/Q12211 Q12211]
 +
** [http://www.uniprot.org/uniprot/P73295 P73295]
 +
** [http://www.uniprot.org/uniprot/P07649 P07649]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=pseudouridine synthase}}
 +
{{#set: common name=Pseudouridine synthase I, TruA, C-terminal}}
 +
{{#set: ec number=EC-5.4.99.12}}
 +
{{#set: gene associated=Ec-05_002890|Ec-22_001870|Ec-28_003620|Ec-14_000160|Ec-07_000310|Ec-27_004410|Ec-07_006750|Ec-26_004180|Ec-01_000690|Ec-27_005240|Ec-06_009680|Ec-09_003890|Ec-14_001350|Ec-08_003150|Ec-14_001540|Ec-14_001340|Ec-06_003220|Ec-20_000700|Ec-04_001540|Ec-06_004490|Ec-17_003530|Ec-21_005910|Ec-20_003420|Ec-19_003680|Ec-01_008790}}
 +
{{#set: in pathway=}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:20, 21 March 2018

Reaction TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • pseudouridine synthase
    • Pseudouridine synthase I, TruA, C-terminal
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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