Difference between revisions of "Ec-14 002880"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-KINASE-RXN SHIKIMATE-KINASE-RXN] == * direction: ** REVERSIBLE * common name: ** P-loop c...")
(Created page with "Category:Gene == Gene Ec-14_002880 == * left end position: ** 2716138 * transcription direction: ** NEGATIVE * right end position: ** 2719265 * centisome position: ** 41.4...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-KINASE-RXN SHIKIMATE-KINASE-RXN] ==
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== Gene Ec-14_002880 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 2716138
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* common name:
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* transcription direction:
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** P-loop containing nucleoside triphosphate hydrolase
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** NEGATIVE
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** shikimate kinase
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* right end position:
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* ec number:
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** 2719265
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** [http://enzyme.expasy.org/EC/2.7.1.71 EC-2.7.1.71]
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* centisome position:
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** 41.401844   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0089_0031
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** Esi0089_0031
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[PEROXID-RXN]]
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** 1 [[SHIKIMATE]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SHIKIMATE-5P]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: go-term
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** 1 shikimate[c] '''+''' 1 ATP[c] '''<=>''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 shikimate 3-phosphate[c]
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* Reaction: [[RXN-14240]]
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** Source: [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: go-term
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-15288]]
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* Gene: [[Ec-02_005600]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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*** Assignment: go-term
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** Source: [[orthology-aragem]]
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* Reaction: [[RXN-17352]]
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* Gene: [[Ec-11_000770]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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*** Assignment: go-term
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== Pathways  ==
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* Reaction: [[RXN-8635]]
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* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
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* [[PWY-7214]]
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* [[PWY-6824]]
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* [[PWY-7445]]
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* [[PWY-5469]]
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* [[PWY-5466]]
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* [[PWY-5461]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=2716138}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13121 13121]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=2719265}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02412 R02412]
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{{#set: centisome position=41.401844    }}
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* UNIPROT:
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{{#set: common name=Esi_0089_0031|Esi0089_0031}}
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** [http://www.uniprot.org/uniprot/P0A6D7 P0A6D7]
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{{#set: reaction associated=PEROXID-RXN|RXN-14240|RXN-15288|RXN-17352|RXN-8635}}
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** [http://www.uniprot.org/uniprot/Q9PIB5 Q9PIB5]
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{{#set: pathway associated=PWY-7214|PWY-6824|PWY-7445|PWY-5469|PWY-5466|PWY-5461}}
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** [http://www.uniprot.org/uniprot/P07547 P07547]
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** [http://www.uniprot.org/uniprot/P08566 P08566]
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** [http://www.uniprot.org/uniprot/P43880 P43880]
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** [http://www.uniprot.org/uniprot/P63600 P63600]
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** [http://www.uniprot.org/uniprot/Q9CEU1 Q9CEU1]
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** [http://www.uniprot.org/uniprot/P37944 P37944]
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** [http://www.uniprot.org/uniprot/P0A6E1 P0A6E1]
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** [http://www.uniprot.org/uniprot/P10880 P10880]
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** [http://www.uniprot.org/uniprot/Q00497 Q00497]
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** [http://www.uniprot.org/uniprot/P34003 P34003]
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** [http://www.uniprot.org/uniprot/P43906 P43906]
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** [http://www.uniprot.org/uniprot/P72796 P72796]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=P-loop containing nucleoside triphosphate hydrolase}}
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{{#set: common name=shikimate kinase}}
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{{#set: ec number=EC-2.7.1.71}}
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{{#set: gene associated=Ec-02_005600|Ec-11_000770}}
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{{#set: in pathway=PWY-6163}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:21, 21 March 2018

Gene Ec-14_002880

  • left end position:
    • 2716138
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 2719265
  • centisome position:
    • 41.401844
  • Synonym(s):
    • Esi_0089_0031
    • Esi0089_0031

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-14_002880&oldid=26293"