Difference between revisions of "Ec-24 001260"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ENOYL-COA-HYDRAT-RXN ENOYL-COA-HYDRAT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ClpP/...")
(Created page with "Category:Gene == Gene Ec-24_001260 == * left end position: ** 1366638 * transcription direction: ** NEGATIVE * right end position: ** 1373286 * centisome position: ** 27.4...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ENOYL-COA-HYDRAT-RXN ENOYL-COA-HYDRAT-RXN] ==
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== Gene Ec-24_001260 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 1366638
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* common name:
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* transcription direction:
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** ClpP/crotonase-like domain
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** NEGATIVE
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** enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
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* right end position:
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** Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ
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** 1373286
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/4.2.1.17 EC-4.2.1.17]
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** 27.400318   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0019_0153
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** Esi0019_0153
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[2.1.1.71-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[TRANS-D2-ENOYL-COA]][c] '''=>''' 1 [[L-3-HYDROXYACYL-COA]][c]
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* With common name(s):
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** 1 H2O[c] '''+''' 1 a trans-2-enoyl-CoA[c] '''=>''' 1 a (3S)-3-hydroxyacyl-CoA[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-14_006530]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-06_001380]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-16_003560]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-16_001250]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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*** Assignment: automated-name-match
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== Pathways  ==
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* Reaction: [[RXN4FS-2]]
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* [[PWY-5136]], fatty acid β-oxidation II (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7007]], methyl ketone biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7007 PWY-7007]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[FAO-PWY]], fatty acid β-oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=FAO-PWY FAO-PWY]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-5138]], unsaturated, even numbered fatty acid β-oxidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5138 PWY-5138]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[PWY66-391]], fatty acid β-oxidation VI (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-391 PWY66-391]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-6825]]
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* [[PWY4FS-3]]
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* [[PWY4FS-4]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=1366638}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16105 16105]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=1373286}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02685 R02685]
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{{#set: centisome position=27.400318    }}
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* PIR:
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{{#set: common name=Esi_0019_0153|Esi0019_0153}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T17476 T17476]
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{{#set: reaction associated=2.1.1.71-RXN|RXN4FS-2}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10464 T10464]
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{{#set: pathway associated=PWY-6825|PWY4FS-3|PWY4FS-4}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S72706 S72706]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57651 S57651]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S54786 S54786]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41006 S41006]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S36678 S36678]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S32607 S32607]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S06477 S06477]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0199 JX0199]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40678 I40678]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I37195 I37195]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69985 G69985]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E70893 E70893]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DWRTEP DWRTEP]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D70893 D70893]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D64890 D64890]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C71435 C71435]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C69893 C69893]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C69370 C69370]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C69304 C69304]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49613 A49613]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A39592 A39592]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P21177 P21177]
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** [http://www.uniprot.org/uniprot/Q08426 Q08426]
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** [http://www.uniprot.org/uniprot/O29814 O29814]
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** [http://www.uniprot.org/uniprot/O29299 O29299]
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** [http://www.uniprot.org/uniprot/O34893 O34893]
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** [http://www.uniprot.org/uniprot/O23520 O23520]
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** [http://www.uniprot.org/uniprot/P76082 P76082]
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** [http://www.uniprot.org/uniprot/P64016 P64016]
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** [http://www.uniprot.org/uniprot/P07896 P07896]
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** [http://www.uniprot.org/uniprot/O53419 O53419]
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** [http://www.uniprot.org/uniprot/P94549 P94549]
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** [http://www.uniprot.org/uniprot/Q13825 Q13825]
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** [http://www.uniprot.org/uniprot/P45361 P45361]
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** [http://www.uniprot.org/uniprot/P28793 P28793]
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** [http://www.uniprot.org/uniprot/P14604 P14604]
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** [http://www.uniprot.org/uniprot/P22414 P22414]
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** [http://www.uniprot.org/uniprot/Q7M0E0 Q7M0E0]
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** [http://www.uniprot.org/uniprot/P34559 P34559]
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** [http://www.uniprot.org/uniprot/Q01373 Q01373]
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** [http://www.uniprot.org/uniprot/P55100 P55100]
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** [http://www.uniprot.org/uniprot/P53526 P53526]
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** [http://www.uniprot.org/uniprot/Q39659 Q39659]
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** [http://www.uniprot.org/uniprot/O52797 O52797]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ClpP/crotonase-like domain}}
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{{#set: common name=enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase}}
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{{#set: common name=Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ}}
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{{#set: ec number=EC-4.2.1.17}}
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{{#set: gene associated=Ec-14_006530|Ec-06_001380|Ec-16_003560|Ec-16_001250}}
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{{#set: in pathway=PWY-5136|PWY-7007|FAO-PWY|PWY-5138|PWY66-391}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:24, 21 March 2018

Gene Ec-24_001260

  • left end position:
    • 1366638
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 1373286
  • centisome position:
    • 27.400318
  • Synonym(s):
    • Esi_0019_0153
    • Esi0019_0153

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-24_001260&oldid=26723"