Difference between revisions of "Ec-05 004560"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] == * direction: ** LEFT-TO-RIGHT * common name: ** Seryl-tRNA synthetase ** se...")
(Created page with "Category:Gene == Gene Ec-05_004560 == * left end position: ** 6493273 * transcription direction: ** NEGATIVE * right end position: ** 6501002 * centisome position: ** 71.3...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] ==
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== Gene Ec-05_004560 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 6493273
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* common name:
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* transcription direction:
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** Seryl-tRNA synthetase
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** NEGATIVE
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** serine-tRNA ligase
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* right end position:
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* ec number:
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** 6501002
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** [http://enzyme.expasy.org/EC/6.1.1.11 EC-6.1.1.11]
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* centisome position:
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** 71.32719   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0129_0004
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** Esi0129_0004
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN0-5462]]
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** 1 [[PROTON]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[tRNA-Sec]][c] '''=>''' 1 [[L-seryl-SEC-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
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* With common name(s):
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** 1 H+[c] '''+''' 1 ATP[c] '''+''' 1 L-serine[c] '''+''' 1 a tRNAsec[c] '''=>''' 1 an L-seryl-[tRNAsec][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-24_004300]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-08_002360]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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== Pathways  ==
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* [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-901 PWY0-901]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: left end position=6493273}}
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** [http://www.genome.jp/dbget-bin/www_bget?R08218 R08218]
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{{#set: transcription direction=NEGATIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=6501002}}
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{{#set: common name=Seryl-tRNA synthetase}}
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{{#set: centisome position=71.32719    }}
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{{#set: common name=serine-tRNA ligase}}
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{{#set: common name=Esi_0129_0004|Esi0129_0004}}
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{{#set: ec number=EC-6.1.1.11}}
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{{#set: reaction associated=RXN0-5462}}
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{{#set: gene associated=Ec-24_004300|Ec-08_002360}}
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{{#set: in pathway=PWY0-901|PWY-6281}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 19:25, 21 March 2018

Gene Ec-05_004560

  • left end position:
    • 6493273
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 6501002
  • centisome position:
    • 71.32719
  • Synonym(s):
    • Esi_0129_0004
    • Esi0129_0004

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-05_004560&oldid=26759"