Difference between revisions of "Ec-01 002340"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** PLP-b...")
(Created page with "Category:Gene == Gene Ec-01_002340 == * left end position: ** 1962618 * transcription direction: ** NEGATIVE * right end position: ** 1967787 * centisome position: ** 19.0...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] ==
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== Gene Ec-01_002340 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 1962618
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* common name:
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* transcription direction:
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** PLP-binding barrel
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** NEGATIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/4.1.1.20 EC-4.1.1.20]
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** 1967787
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* centisome position:
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** 19.019764   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0003_0065
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** Esi0003_0065
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.11.1.15-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[MESO-DIAMINOPIMELATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[LYS]][c]
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* With common name(s):
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** 1 H+[c] '''+''' 1 meso-diaminopimelate[c] '''=>''' 1 CO2[c] '''+''' 1 L-lysine[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-01_000060]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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*** Assignment: go-term
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* Gene: [[Ec-09_002360]]
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* Reaction: [[RXN0-5468]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-09_002410]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-09_002420]]
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** Source: [[orthology-aragem]]
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== Pathways  ==
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* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=1962618}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15101 15101]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=1967787}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
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{{#set: centisome position=19.019764    }}
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* UNIPROT:
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{{#set: common name=Esi_0003_0065|Esi0003_0065}}
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** [http://www.uniprot.org/uniprot/P19572 P19572]
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{{#set: reaction associated=1.11.1.15-RXN|RXN0-5468}}
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** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
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** [http://www.uniprot.org/uniprot/P44316 P44316]
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** [http://www.uniprot.org/uniprot/P56129 P56129]
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** [http://www.uniprot.org/uniprot/O67262 O67262]
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** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
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** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
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** [http://www.uniprot.org/uniprot/P00861 P00861]
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** [http://www.uniprot.org/uniprot/O27390 O27390]
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** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
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** [http://www.uniprot.org/uniprot/Q58497 Q58497]
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** [http://www.uniprot.org/uniprot/O29458 O29458]
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** [http://www.uniprot.org/uniprot/P41023 P41023]
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** [http://www.uniprot.org/uniprot/P23630 P23630]
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** [http://www.uniprot.org/uniprot/P09890 P09890]
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** [http://www.uniprot.org/uniprot/Q55484 Q55484]
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** [http://www.uniprot.org/uniprot/O05321 O05321]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=PLP-binding barrel}}
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{{#set: ec number=EC-4.1.1.20}}
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{{#set: gene associated=Ec-01_000060|Ec-09_002360|Ec-09_002410|Ec-09_002420}}
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{{#set: in pathway=PWY-5097|PWY-2942|DAPLYSINESYN-PWY|PWY-2941}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:33, 21 March 2018

Gene Ec-01_002340

  • left end position:
    • 1962618
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 1967787
  • centisome position:
    • 19.019764
  • Synonym(s):
    • Esi_0003_0065
    • Esi0003_0065

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-01_002340&oldid=27772"