Difference between revisions of "Ec-14 000420"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2382 RXN0-2382] == * direction: ** LEFT-TO-RIGHT * common name: ** Tryptophan synthase beta su...")
(Created page with "Category:Gene == Gene Ec-14_000420 == * left end position: ** 325899 * transcription direction: ** NEGATIVE * right end position: ** 347331 * centisome position: ** 4.9676...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2382 RXN0-2382] ==
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== Gene Ec-14_000420 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 325899
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* common name:
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* transcription direction:
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** Tryptophan synthase beta subunit-like PLP-dependent enzyme
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** NEGATIVE
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** Tryptophan synthase (alpha / beta chains)
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* right end position:
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** Tryptophan synthase, beta chain
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** 347331
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/4.2.1.122 EC-4.2.1.122]
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** 4.9676485   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0029_0064
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** Esi0029_0064
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ATPASE-RXN]]
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** 1 [[SER]][c] '''+''' 1 [[INDOLE]][c] '''=>''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
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* With common name(s):
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** 1 L-serine[c] '''+''' 1 indole[c] '''=>''' 1 L-tryptophan[c] '''+''' 1 H2O[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-20_002800]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-24_004010]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-06_007490]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-24_002360]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-17_002680]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-27_001950]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-01_012080]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-00_008830]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=325899}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26434 26434]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=347331}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00674 R00674]
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{{#set: centisome position=4.9676485    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Esi_0029_0064|Esi0029_0064}}
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{{#set: common name=Tryptophan synthase beta subunit-like PLP-dependent enzyme}}
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{{#set: reaction associated=ATPASE-RXN}}
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{{#set: common name=Tryptophan synthase (alpha / beta chains)}}
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{{#set: common name=Tryptophan synthase, beta chain}}
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{{#set: ec number=EC-4.2.1.122}}
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{{#set: gene associated=Ec-20_002800|Ec-24_004010|Ec-06_007490|Ec-24_002360|Ec-17_002680|Ec-27_001950|Ec-01_012080|Ec-00_008830}}
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{{#set: in pathway=TRPSYN-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:34, 21 March 2018

Gene Ec-14_000420

  • left end position:
    • 325899
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 347331
  • centisome position:
    • 4.9676485
  • Synonym(s):
    • Esi_0029_0064
    • Esi0029_0064

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-14_000420&oldid=27805"