Difference between revisions of "RXN-9839"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-8610 CPD-8610] == * smiles: ** CC(C)CCCC([CH]4(C1(C)([CH](C2(=C(CC1)C3(C)([CH](CC2)C(C)(C)C...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9839 RXN-9839] == * direction: ** LEFT-TO-RIGHT * common name: ** Mannuronan C-5-epimerase ** M...")
 
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-8610 CPD-8610] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9839 RXN-9839] ==
−
* smiles:
+
* direction:
−
** CC(C)CCCC([CH]4(C1(C)([CH](C2(=C(CC1)C3(C)([CH](CC2)C(C)(C)C(O)CC3)))CC4)))C
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=FYHRVINOXYETMN-QGBOJXOESA-N
+
 
* common name:
 
* common name:
−
** 4,4-dimethyl-5α-cholesta-8-en-3-β-ol
+
** Mannuronan C-5-epimerase
−
* molecular weight:
+
** Mannuronan C-5-epimerase 4
−
** 414.713   
+
* ec number:
 +
** [http://enzyme.expasy.org/EC/5.1.3.37 EC-5.1.3.37]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
+
* With identifiers:
−
* [[RXN66-14]]
+
** 1 [[Poly-beta-D-Mannuronate]][c] '''=>''' 1 [[ALGINATE]][c]
−
== Reaction(s) of unknown directionality ==
+
* With common name(s):
 +
** 1 mannuronan[c] '''=>''' 1 alginate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-08_004820]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-25_001850]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-24_002750]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-20_004700]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-11_000400]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-07_000890]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-12_000360]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-06_006700]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-19_003150]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-27_006700]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-09_003950]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways  ==
 +
* [[PWY-6082]], alginate biosynthesis II (bacterial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6082 PWY-6082]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6073]], alginate biosynthesis I (algal): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6073 PWY-6073]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=23427666 23427666]
+
{{#set: common name=Mannuronan C-5-epimerase}}
−
* CHEMSPIDER:
+
{{#set: common name=Mannuronan C-5-epimerase 4}}
−
** [http://www.chemspider.com/Chemical-Structure.10474091.html 10474091]
+
{{#set: ec number=EC-5.1.3.37}}
−
* LIGAND-CPD:
+
{{#set: gene associated=Ec-08_004820|Ec-25_001850|Ec-24_002750|Ec-20_004700|Ec-11_000400|Ec-07_000890|Ec-12_000360|Ec-06_006700|Ec-19_003150|Ec-27_006700|Ec-09_003950}}
−
** [http://www.genome.jp/dbget-bin/www_bget?C15915 C15915]
+
{{#set: in pathway=PWY-6082|PWY-6073}}
−
* HMDB : HMDB06840
+
{{#set: reconstruction category=annotation}}
−
{{#set: smiles=CC(C)CCCC([CH]4(C1(C)([CH](C2(=C(CC1)C3(C)([CH](CC2)C(C)(C)C(O)CC3)))CC4)))C}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
−
{{#set: inchi key=InChIKey=FYHRVINOXYETMN-QGBOJXOESA-N}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: common name=4,4-dimethyl-5α-cholesta-8-en-3-β-ol}}
+
−
{{#set: molecular weight=414.713    }}
+
−
{{#set: produced by=RXN66-14}}
+

Latest revision as of 19:34, 21 March 2018

Reaction RXN-9839

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Mannuronan C-5-epimerase
    • Mannuronan C-5-epimerase 4
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6082, alginate biosynthesis II (bacterial): PWY-6082
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-6073, alginate biosynthesis I (algal): PWY-6073
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-9839&oldid=27895"