Difference between revisions of "ARGININE--TRNA-LIGASE-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.11.18-RXN 3.4.11.18-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** obsolete methionyl...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGININE--TRNA-LIGASE-RXN ARGININE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.11.18-RXN 3.4.11.18-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGININE--TRNA-LIGASE-RXN ARGININE--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** obsolete methionyl aminopeptidase
+
** DALR anticodon binding
−
** Peptidase M24, structural domain
+
** Arginyl-tRNA Synthetase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.4.11.18 EC-3.4.11.18]
+
** [http://enzyme.expasy.org/EC/6.1.1.19 EC-6.1.1.19]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Protein-With-N-Terminal-Met]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[Peptides-holder]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[ARG-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[ARG]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-ARG-tRNAs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a peptide with an N-terminal L-methionine[c] '''+''' 1 H2O[c] '''=>''' 1 L-methionine[c] '''+''' 1 a peptide[c] '''+''' 1 H+[c]
+
** 1 H+[c] '''+''' 1 a tRNAarg[c] '''+''' 1 ATP[c] '''+''' 1 L-arginine[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-arginyl-[tRNAarg][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-27_005340]]
+
* Gene: [[Ec-01_003640]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Assignment: GO-TERM
+
*** Assignment: EC-NUMBER
−
* Gene: [[Ec-04_004530]]
+
* Gene: [[Ec-03_001410]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Ec-27_005350]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: GO-TERM
 
−
* Gene: [[Ec-04_004560]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: GO-TERM
 
−
* Gene: [[Ec-07_001830]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: GO-TERM
 
−
* Gene: [[Ec-20_001930]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: GO-TERM
 
 
== Pathways  ==
 
== Pathways  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 42: Line 32:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20301 20301]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03646 R03646]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P38062 P38062]
+
** [http://www.uniprot.org/uniprot/P40329 P40329]
−
** [http://www.uniprot.org/uniprot/P47418 P47418]
+
** [http://www.uniprot.org/uniprot/P35868 P35868]
−
** [http://www.uniprot.org/uniprot/Q9PM25 Q9PM25]
+
** [http://www.uniprot.org/uniprot/P43832 P43832]
−
** [http://www.uniprot.org/uniprot/P28617 P28617]
+
** [http://www.uniprot.org/uniprot/O51540 O51540]
−
** [http://www.uniprot.org/uniprot/P44421 P44421]
+
** [http://www.uniprot.org/uniprot/O67068 O67068]
−
** [http://www.uniprot.org/uniprot/Q9UYT4 Q9UYT4]
+
** [http://www.uniprot.org/uniprot/O59147 O59147]
−
** [http://www.uniprot.org/uniprot/P0AE18 P0AE18]
+
** [http://www.uniprot.org/uniprot/O83803 O83803]
−
** [http://www.uniprot.org/uniprot/P50579 P50579]
+
** [http://www.uniprot.org/uniprot/Q9ZE81 Q9ZE81]
−
** [http://www.uniprot.org/uniprot/Q9JWK1 Q9JWK1]
+
** [http://www.uniprot.org/uniprot/Q9PNC0 Q9PNC0]
−
** [http://www.uniprot.org/uniprot/Q58725 Q58725]
+
** [http://www.uniprot.org/uniprot/Q9X0H8 Q9X0H8]
−
** [http://www.uniprot.org/uniprot/P56218 P56218]
+
** [http://www.uniprot.org/uniprot/P46906 P46906]
−
** [http://www.uniprot.org/uniprot/P19994 P19994]
+
** [http://www.uniprot.org/uniprot/Q57689 Q57689]
−
** [http://www.uniprot.org/uniprot/P22624 P22624]
+
** [http://www.uniprot.org/uniprot/O27496 O27496]
−
** [http://www.uniprot.org/uniprot/P0A1X6 P0A1X6]
+
** [http://www.uniprot.org/uniprot/Q9JTM7 Q9JTM7]
−
** [http://www.uniprot.org/uniprot/P41392 P41392]
+
** [http://www.uniprot.org/uniprot/Q9CE12 Q9CE12]
−
** [http://www.uniprot.org/uniprot/Q59509 Q59509]
+
** [http://www.uniprot.org/uniprot/P56128 P56128]
−
** [http://www.uniprot.org/uniprot/Q01662 Q01662]
+
** [http://www.uniprot.org/uniprot/P47618 P47618]
−
** [http://www.uniprot.org/uniprot/P95963 P95963]
+
** [http://www.uniprot.org/uniprot/Q9ZMB9 Q9ZMB9]
−
** [http://www.uniprot.org/uniprot/P53579 P53579]
+
** [http://www.uniprot.org/uniprot/Q08888 Q08888]
−
** [http://www.uniprot.org/uniprot/P53581 P53581]
+
** [http://www.uniprot.org/uniprot/P54136 P54136]
−
** [http://www.uniprot.org/uniprot/P53580 P53580]
+
** [http://www.uniprot.org/uniprot/P38714 P38714]
−
** [http://www.uniprot.org/uniprot/Q9FV49 Q9FV49]
+
** [http://www.uniprot.org/uniprot/Q05506 Q05506]
−
** [http://www.uniprot.org/uniprot/Q9Z9J4 Q9Z9J4]
+
** [http://www.uniprot.org/uniprot/P75222 P75222]
−
** [http://www.uniprot.org/uniprot/Q9RKR2 Q9RKR2]
+
** [http://www.uniprot.org/uniprot/P11875 P11875]
 +
** [http://www.uniprot.org/uniprot/O23247 O23247]
 +
** [http://www.uniprot.org/uniprot/O74781 O74781]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=obsolete methionyl aminopeptidase}}
+
{{#set: common name=DALR anticodon binding}}
−
{{#set: common name=Peptidase M24, structural domain}}
+
{{#set: common name=Arginyl-tRNA Synthetase}}
−
{{#set: ec number=EC-3.4.11.18}}
+
{{#set: ec number=EC-6.1.1.19}}
−
{{#set: gene associated=Ec-27_005340|Ec-04_004530|Ec-27_005350|Ec-04_004560|Ec-07_001830|Ec-20_001930}}
+
{{#set: gene associated=Ec-01_003640|Ec-03_001410}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=TRNA-CHARGING-PWY}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:34, 21 March 2018

Reaction ARGININE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • DALR anticodon binding
    • Arginyl-tRNA Synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 a tRNAarg[c] + 1 ATP[c] + 1 L-arginine[c] => 1 AMP[c] + 1 diphosphate[c] + 1 an L-arginyl-[tRNAarg][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=ARGININE--TRNA-LIGASE-RXN&oldid=27911"