Difference between revisions of "RXN-15127"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7913 RXN-7913] == * direction: ** LEFT-TO-RIGHT * common name: ** Adenylate kinase/UMP-CMP kina...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15127 RXN-15127] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7913 RXN-7913] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15127 RXN-15127] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** Adenylate kinase/UMP-CMP kinase
 
−
** cytidylate kinase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.4.25 EC-2.7.4.25]
+
** [http://enzyme.expasy.org/EC/3.5.99.10 EC-3.5.99.10]
−
** [http://enzyme.expasy.org/EC/2.7.4.14 EC-2.7.4.14]
+
−
** [http://enzyme.expasy.org/EC/2.7.4.13 EC-2.7.4.13]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[DCMP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[DCDP]][c] '''+''' 1 [[ADP]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[CPD-16015]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[PYRUVATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 dCMP[c] '''+''' 1 ATP[c] '''=>''' 1 dCDP[c] '''+''' 1 ADP[c]
+
** 1 H2O[c] '''+''' 1 2-iminopropanoate[c] '''+''' 1 H+[c] '''=>''' 1 ammonium[c] '''+''' 1 pyruvate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* Gene: [[Ec-14_004920]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
−
* Gene: [[Ec-16_005090]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
−
* Gene: [[Ec-06_003080]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: GO-TERM
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-07_003680]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
+
* [[PWY0-1535]], D-serine degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1535 PWY0-1535]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[TRYPDEG-PWY]], L-tryptophan degradation II (via pyruvate): [http://metacyc.org/META/NEW-IMAGE?object=TRYPDEG-PWY TRYPDEG-PWY]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-3661]], glycine betaine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661 PWY-3661]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[SERDEG-PWY]], L-serine degradation: [http://metacyc.org/META/NEW-IMAGE?object=SERDEG-PWY SERDEG-PWY]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
 +
** '''8''' reactions found over '''24''' reactions in the full pathway
 +
* [[LCYSDEG-PWY]], L-cysteine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=LCYSDEG-PWY LCYSDEG-PWY]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-aragem]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25094 25094]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01665 R01665]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Adenylate kinase/UMP-CMP kinase}}
+
{{#set: ec number=EC-3.5.99.10}}
−
{{#set: common name=cytidylate kinase}}
+
{{#set: in pathway=PWY0-1535|TRYPDEG-PWY|PWY-3661|SERDEG-PWY|PWY-5497|LCYSDEG-PWY}}
−
{{#set: ec number=EC-2.7.4.25}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: ec number=EC-2.7.4.14}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
−
{{#set: ec number=EC-2.7.4.13}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: gene associated=Ec-14_004920|Ec-16_005090|Ec-06_003080|Ec-07_003680}}
+
−
{{#set: in pathway=PWY-7197}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:39, 21 March 2018

Reaction RXN-15127

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 2-iminopropanoate[c] + 1 H+[c] => 1 ammonium[c] + 1 pyruvate[c]

Genes associated with this reaction

Pathways

  • PWY0-1535, D-serine degradation: PWY0-1535
    • 2 reactions found over 3 reactions in the full pathway
  • TRYPDEG-PWY, L-tryptophan degradation II (via pyruvate): TRYPDEG-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-3661, glycine betaine degradation I: PWY-3661
    • 3 reactions found over 7 reactions in the full pathway
  • SERDEG-PWY, L-serine degradation: SERDEG-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic): PWY-5497
    • 8 reactions found over 24 reactions in the full pathway
  • LCYSDEG-PWY, L-cysteine degradation II: LCYSDEG-PWY
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-15127&oldid=28418"